Pseudomonas helleri DSM 29165, TU84_RS10485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 5_388921_28.3315, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTACTGGGCATTCTGTACGAGAGCTACATTCACCCGCTGACCATCCTCTCGACCTTACCGTCAGCGGGGGTCGGGGCGCTGTTGAGCATTTACCTCA CGGGCGGTGAATTCAGCCTGATTTCGTTGCTCGGGATCTTCCTGCTGATCGGCGTGGTGAAGAAAAACGCCATCCTGATGATCGACCTGGCCCTGCAACT GGAACGGCATTCGGGGATGGGCCCGCAAGAGTCCATCCGCAGCGCCTGCCTGCAACGTTTGCGGCCGATCCTGATGACCACCTTGGCGGCCATCCTTGGC GCCTTGCCGTTGATGCTCAGCCATGCCGAAGGCGCCGAGATGCGCCAGCCCTTGGGCCTCACCATCATCGGCGGGCTGGTCTTCAGCCAGATCCTGACCC TTTACACCACCCCGGTGGTTTACCTCTATCTCGACCGTGCGCGCCATCGTTTCAACCAATGGCGTGGTGTGCGTACTGATGCTGCTCTGGAAACTCCGCT
|
|
| DNA Sequence for Gene |
>TU84_RS10485
ATGACCTCTCGTTTGCTTAACCTTGCTCCGGCTTTGTCGCCACAACGTTGGGCGCTCGCCCGTGGCTCGCGTCTGTTGGGCCTGGTGCTGACCGGCGTGC TGCTCAGCGCCTGTGCGGTGGGGCCGGATTACCAGCGCCCTGAACTGGCCGTGCCGCAGCAGTTCAACGCGGTTGATGGCTGGACCCAGGCCAACCCGAG CGATGCCCTGGAGCGGGGCGCCTGGTGGGAGTTGTACGCTGACCCGCAGCTCAACGCGCTGGTGGCCAAGCTCAACAGCAACAACCAGAGTGTTGCCCAG GCCGAGGCGCAATTTCGCCAAGCCCAGGCGCTGGTGCGCAATGCCCGTGGAGCCTTCTTGCCGAGTGCTGATTTAAGTGTGGGTAAAACCCGCTCCAGCC AGGGTACCGGCAGTTCCAACTCCAGCCTGACCAGTTCCAGCAGCGGTATTCGCGACACCTTGAACGCACAGGTCGGCGTCAGTTGGGAGGCTGATGTCTG GGGCAAATTGCGGCGCGGCCTTGAGGCCAATGAAGCCAGCGCCGAAGCCAGCTATGCCGACCTGGCAGCCATGCGCTTGAGCCAACAGTCGGAGCTGGTG CAGAACTACCTGCAACTGCGGGTGATTGATCAGCAGAAGCGTTTGTTGGAAGCGACCGTCGAGGCGTATGAGCGGTCGCTGAAAATGAGCGAAAACCAGT ACCGCGCCGGGATCTCCGGCAAAGATGCGGTGGCGCAAGCGCAGACCCAATTGCGCAATACCCAGGCCAGCCTGATCGACCTGATCTGGCAACGTGCCCA GTTTGAAAACGCCATTGCGGTGCTCACCGGTCAACCGCCGACGGGCTTCAAACTGGCAGAAATCAACGACATCCCCAAGCTGCCGGCGATCCCGGTCAGC GTGCCTTCGCAACTACTTGAGCGGCGCCCGGACATTGCCTCGGCAGAGCGCTCGATTATTGCCGCCAACGCCAACATAGGCGTGGCCAAGGCAGCGTACT ACCCGGACTTCAGCCTGAGCCTGTCGGGCGGCTACAGCAGCAGCCAGTATCAGGACTGGATCAGCGCGCCAAACCGGTTCTGGTCGGTGGGGCCAAAAAT TTCATTGCCATTGTTTGATGGCGGCCAGCGTTCGGCCGAAGTGGACCGTAACGAAGCCGTGTATGACCAGACCGTGGCTAAATACCGTCAGACCGTGCTC GACGGTTTCCGTGAGGTGGAAAACTACAGGATCCAGTTGAAAGTGCTGGGTGATGAAACCGTGGTGCAAGAGCAGGCGCTGGAATCGGCCCGCGAATCAC TTCGTCTGACCACCAATCAGTACAAGGCGGGTTTGATTGCGTATCTGGATGTCGTCAACGTTCAAACCACCGCCTTGAGCACCGAGCGCAGCGTCTTGAA CCTGCTGCAAAGCCGCTTGATCGCCAGCGTGCAATTGATCGCCGCGCTGGGCGGTGGCTGGGACGGAAAAATGGAAGTGAGCGAGCGCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCCTGCTCAGGCTACGTCCGGCGTAGTCGCTGACGAGGCACGAAGGCTGCGAAAGATCAAAAGATCGCGGTGCACACAAATCCCGTAGCAGTTGACGAG ATTTGCGAGGCTACGTCCGACCGTAGACGCTGACGAGGTGCGAAGGCTGCGAAAGATCAAAAGATCGCGAGGCAAGCTCGCTCCTACAGTTGGTGATTTA CAAAGACCCCGTAGCAGTTGACGAGCTTTGCGAGGCTACGTCCGACCGTAGTCGCTGACGAGGTGCGAAGGCTGCGAAAGATCAAAAGATCGCGAGGCAA GCTCGCTCCTACAGTTGGTGATTTACAAAGACCCCGTAGCAGTTGACGAGCTTTGCGAGGCTACGTCCGGCGTAGTCGCTGACGAGGCACGAAGGCTGCG AAAAATTAAAGGATCGCGAGATTTAGTGCGTTCTGTAGCCTCAATCAGCATGAAACGTAAACCGGTCCTTGCCACTATTTTTGGACGCGTACAGCGCTTT
|
|
| Amino Acid Sequence |
>RND transporter
MTSRLLNLAPALSPQRWALARGSRLLGLVLTGVLLSACAVGPDYQRPELAVPQQFNAVDGWTQANPSDALERGAWWELYADPQLNALVAKLNSNNQSVAQ AEAQFRQAQALVRNARGAFLPSADLSVGKTRSSQGTGSSNSSLTSSSSGIRDTLNAQVGVSWEADVWGKLRRGLEANEASAEASYADLAAMRLSQQSELV QNYLQLRVIDQQKRLLEATVEAYERSLKMSENQYRAGISGKDAVAQAQTQLRNTQASLIDLIWQRAQFENAIAVLTGQPPTGFKLAEINDIPKLPAIPVS VPSQLLERRPDIASAERSIIAANANIGVAKAAYYPDFSLSLSGGYSSSQYQDWISAPNRFWSVGPKISLPLFDGGQRSAEVDRNEAVYDQTVAKYRQTVL DGFREVENYRIQLKVLGDETVVQEQALESARESLRLTTNQYKAGLIAYLDVVNVQTTALSTERSVLNLLQSRLIASVQLIAALGGGWDGKMEVSER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|