Pseudomonas helleri DSM 29165, TU84_RS08595
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 4_407290_31.218, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTCGATAATGTGTGGCCAACCCTAAAACCACTGCTTTGATGCTTTTCTAGTGGCATGGTTTCGGCTAATGTGGCGCCCCCCCGATTTGGAGCCCCTGAT GTCGCGTCCTGCCTGGTCTTTATATGCTTATCAACTGATCGAGCCCGATGAACAGCTCGATTTGTTCGCCTGCCAGGAGGTACGGGTACATTTGGTCACG CGCCAATTGGAGCTGGGTGGCACAATCGACCGCACCCTGTGTGGCTCATTGCTGCCCGCGCAGCCGCGTTGGTCGGATGTCACGCGCAAGGTGTTTCAGG ATCACCGGCTTTGCCCGCTGTGCCGTGCAATTATTGAGTCTCAGCGCCGTGGCACTGAGCCGATCTGGCCCGAATTGCGCTTTGAATTGTGATGTAACCT GTCTGAAACCTTAAGACTCAATACGCCGCCTCCCGGCTTTTCGAGGTGGCGTGTACACTCTCTTTTTTGTCCCCTGTTGATTATGCGAAGGGTCTTCCGG
|
|
| DNA Sequence for Gene |
>TU84_RS08595
ATGTTCTCGCGCTTACCTGCTGTCACCCGTTATCTGTCAGTTGCCGCACTGTGTGTTGCGGGTCCCGTTCATGCGCTTGAATTTCCGCTGCCGCCACCGG GTGAAGACGTGGTCGGGCAGGTGCAAGTCATCAAGGGCAAATACGAAGATTCTTTCTCGGACCTTGGCAACCAGTACGAACTGGGCTACTCCGAAATGAT TGCCGCCAACCCAGGTGTGGATGCCTGGCTGCCTGTCAAAAAGAACCTCGACGGCTCGATCGTTGACACCGATATTGTCTTGCCGACCCAGTTCATCCTG CCGCCGGGCAAGCGCGAAGGCATCGTGATCAACCTTGCCGAGTACCGCTTGTATTATTTCCCCAAAGGCCAGAACAAGGTGTACACCTTTCCGCTGGGGA TCGGCCGTGAAGGCTGGGGCTCGCCTTTGGGCCTGACCAAGGTCACGGCCAAAACGCCAAACCCGACCTGGACGCCTCCTGCTTCGATCAAGGCCGAACA CGCCGCCAATGGTGACCCGCTGCCTAACGTTGTGCCGGCAGGGCCGGACAACCCGCTGGGGCCGTTCAAGTTCACCCTGGGCATGCCGGGTTACCTGATT CATGGTTCCAACGCCAAGTTCGGTATCGGCACAGGCACCAGCCACGGCTGTTTCCGCATGCTTAACAAAAACGTACTCGAGATGGCCAGCATGGTGCCGG TGGGCACGCCGGTTCGCATCATCAACGAACCGTACAAACTCGGTGTAAGTGGCGGCAAGGTATTCCTTGAAGTGCACGAGCCGTTGAATGTCAAAGATGG CTCTTTGCTAGCCAAAAGTGACAAGTCGCATTTGACTCAGGAAGATCTGCAGAACAAGTACGCAGGCTTTATCAACTTCCTGCTTAAGCATAAAGACCTG GAAAAGGTCATCCAGATCGACAAAGACAAAGCGTTCCCTGTGGTCGGTGCCGAAACCGGCATACCTCAGGAGATCGGTGTGGCCAACACCACGGTGCAAC AGGGTCAGTCGCTGGACTACGTTCAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCACCCAGGCACTAAAACAGCCGCCACGGTTAACGCCCTGGCGGTTTTTTATTGCCTGCTTAGTTGGTAGCAGGCATAAAAAAAGCCGACCCATAAAAA TGGGTCGGCTTCGATAATAATCCCGAAGGACTATTACTTGCGGCTAGCTTTTTCAAGCATACGCAGAGCACGTTCGTTAGCTTCATCAGCAGTCTGTTGT GCTTTTTGAGCAGCAGCCAGAGCTTCGTCAGCTTTGCGGTAGGCTTCGTCAGCACGAGCCTGGGAACGAGCTGCTGCGTCTTCAGTTGCAGTCAGACGGG CTTCAGTTTCTTTAGATACGCTGCTGCAACCGGTAGCCAGAACTGCGGCCAATGCCAGAGCAGAGAATTTCAGAACGTTGTTCATCGTGTTCCCCTTCAA GGACTTTCTAATTAAAGCTGCTCCTTCAACATGAGGAAACAGCCGGCGTACATACTACCCATTACTTGTAGTAAGTAAACTGACCTAGCGCAAGAACCAA
|
|
| Amino Acid Sequence |
>ErfK/YbiS/YcfS/YnhG family protein
MFSRLPAVTRYLSVAALCVAGPVHALEFPLPPPGEDVVGQVQVIKGKYEDSFSDLGNQYELGYSEMIAANPGVDAWLPVKKNLDGSIVDTDIVLPTQFIL PPGKREGIVINLAEYRLYYFPKGQNKVYTFPLGIGREGWGSPLGLTKVTAKTPNPTWTPPASIKAEHAANGDPLPNVVPAGPDNPLGPFKFTLGMPGYLI HGSNAKFGIGTGTSHGCFRMLNKNVLEMASMVPVGTPVRIINEPYKLGVSGGKVFLEVHEPLNVKDGSLLAKSDKSHLTQEDLQNKYAGFINFLLKHKDL EKVIQIDKDKAFPVVGAETGIPQEIGVANTTVQQGQSLDYVQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|