Pseudomonas helleri DSM 29165, TU84_RS08060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 4_407290_31.218, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACCATCATCGACCAGGGTGGCGCCGAACAACTGCTGGGCCACGGTGACATGCTCTACATGCCGCCAGGCACAAGTTTGCCGATTCGGGTACACGGTGCG TTCGTGTCTGACGAAGAAGTGCACCGTGTGGTTGAAGCCTGGAAACAGCGTGGTACACCGGACTATAACGATGACATTCTGGCGGGCGTCGAAGAGCCGG GTAGCGGCTTTGATGGCGGTAGCAGTGAAGGCGGCGATGACGCTGAAACCGATGCGCTGTACGACGAGGCTGTGCAGTTCGTGCTCGAAAGCCGTCGCGC TTCGATCTCTGCGGTTCAACGCAAACTGAAGATCGGCTACAACCGCGCGGCACGCATGATCGAGTCCATGGAAATGGCCGGGGTCGTGACCGCAATGAAT ACCAACGGCTCGCGCGAAGTGATAGCGCCGGCTCCAATGCGCGACTGATCTGCTCGCAGGTAAGCTGCAAGCAGGGTTTAACTAATCAATGAGGATTTCC
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| DNA Sequence for Gene |
>TU84_RS08060
ATGCGTTTTGTCAGCATGTTGTTGCTACCGGTTTTGGCGTTGACTGCCTTTTCCGCCAGTGCCGCTCCGGCGGATGTACAGAGCCTGACCAACCTTCTGG AACGGTCGAAAACCTTGACGGCCAATTTTTCTCAGTTGACCCTCGATGGCAGCGGCACCCAGTTGCAAGACACCAAAGGGCAAATGGCCTTGCAGCGTCC GGGGTTGTTCTACTGGCACACTGATGCGCCGAACGAGCAGACCATGGTTTCCGATGGCCAGAAAGTTACTTTGTGGGACCCGGACCTGGAGCAGGTCACC ATCAAGAAGCTTGATCAGCGCCTGACCCAGACCCCGGCCTTGCTGCTCTCGGGTGATGTCTCAAAAATCAGCGAAAGCTTTGATATCACCTCCAAACAAT CGGGTGAAGTGATCGACTTCACGCTCAAGCCAAAAACCAAAGACACCCTGTTTGACTCGCTGAACCTGTCGTTTCGCAGTGGCCTGATCAACAACATGCG TCTGGTTGATAGCGTAGGTCAGCGCACTGATCTGCTGTTCACCGGGGTCAAGGCCAACGAGCCGATCCCGGCGTCCAAATTCAAGTTCGATATCCCGAAA GGGGCTGATGTCATCCAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCTGGACGAGGTTTCAAACGCCGCTATGGATCTGTTTCGAAGTGCACCGATTGCCCAGCCCTTGGCCGCCCGTCTACGGGCGACCAATCTGGATGAGT ATGTCGGTCAACAACACCTGCTCGCCCGGGGCAAGCCCCTGCGTGAAGCGCTGGAGCAGGGCGCGCTGCACTCGATGATCTTCTGGGGGCCGCCCGGTGT GGGTAAAACCACGCTGGCGCGGCTGCTGGCTGAAGTCTCGGATGCTCATTTTGAAACGGTCTCGGCCGTCCTGGCCGGGGTCAAGGAGATCCGCCAGGCG GTGGAAATCGCCAAGCAGCAAGCCGGCCAGTACGGGCGGCGGACCATTCTGTTTGTCGACGAAGTGCACCGCTTCAACAAGTCGCAGCAAGATGCGTTCT TGCCCTACGTTGAAGACGGCACCCTGATTTTTATCGGTGCGACCACCGAAAACCCCTCCTTTGAGCTCAACAACGCCCTGTTGTCACGGGCGCGGGTCTA
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| Amino Acid Sequence |
>membrane protein
MRFVSMLLLPVLALTAFSASAAPADVQSLTNLLERSKTLTANFSQLTLDGSGTQLQDTKGQMALQRPGLFYWHTDAPNEQTMVSDGQKVTLWDPDLEQVT IKKLDQRLTQTPALLLSGDVSKISESFDITSKQSGEVIDFTLKPKTKDTLFDSLNLSFRSGLINNMRLVDSVGQRTDLLFTGVKANEPIPASKFKFDIPK GADVIQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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