Pseudomonas helleri DSM 29165, TU84_RS07950
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 4_407290_31.218, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCACTGAAGCAGGTAATGCCGCCTTTGATCTGCTCGGCTATGGCCAGGTCGGTACCGTCGCGAACGAACGCCTCATCGACCCACTTGGCCTCGGCCGGCC AGATATGGTTTTCCAGCCAGGTCATCAGGGGCAGGTCATCGGCCATGCCGCGGAACAACGTCATTGCCGCGTGACCGTGGGCATTGATCAGCCCCGGACT GAGCAGCATCTCGGGGAGTTCGCGGGTTTCAAGGGCGGTGTGTTTTTCGGCGAGGTGGCGCGGTCCCATAAATACAATGCGTCCGTCCTGGATGCCCACA GCATGGTCCTTGAGTACGACCCCGGCGGGTTCAACAGGTACGAGCCAGGTGGGGAGCAGCAATAAGTCGAAGGTCAAGGGCTGGGTTGGCATCAAAAATG ACTTCCGGTGCATTATAAAAAGGACGCGAAGTATACCCGAGCGTCTTGGGGGCGGGCTCGCTATAATCGGCGGTTTTGTATCAGGGTGATAGGGGAAGTC
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| DNA Sequence for Gene |
>TU84_RS07950
ATGCGCGATCGACTGTTGGCCGCTGAAAAGGTAAAGGCCATTGATTGGCAGGGTGAAGCCCTGCATCTGCTGGATCAGCGCATTTTGCCTTTTGAAGAGA ACTGGCTGGCCTATACCGACGCTGAGGGAGTTGCTCAGGCCATTCGTGACATGGTGGTGCGTGGCGCCCCGGCGATTGGTATTGCGGCGGCCTATGGCGT AGTGCTGGCGGCGCGTGATCGCAAGGCGGCAGGCGGTGACTGGGTGGCGGCGCTGGAGCAGGATTTCTCCCTGTTGGCGAACTCGCGACCGACCGCGGTG AACCTGTTTTGGGCGCTTAACCGTATGCGCGACCGTCTGGAGCGCTGCAAAGACAACACCGATGCGCTGCAGGCGCTTGAAGACGAAGCCGTCGCGATCC ATGAGAGCGATCGCGAGGCCAATCTGACCATGGCGCAGTTGGGTGTCGATGTGATCCGTCGCCATCAGGGCAATGCCCAGACCGTATTGACCCACTGCAA CACTGGAGCGCTGGCAACCGGCGGCTTTGGCACGGCACTGGGGGTCATTCGCGGCGCATGGATCGAGGGCATGATCGAACAGGTGTATGCCGATGAAACC CGGCCGTGGTTGCAAGGCTCGCGCCTGACTGCCTGGGAGCTGGCCAACGAGGGGATCCCGGTGATTTTGAACGTGGACTCGGCTGCAGCCCACATCATGA AAACCAAGGGCGTGACCTGGGTGATTGTCGGCGCTGATCGCATTACCGCCAATGGTGACGTGGCAAACAAGATCGGCACCTACCAGTTGGCGGTCAATGC CATGCACCACGGTGTGCGCTTTATGGTGGTTGCGCCGAGTTCAACCATCGACATGGACCTGGCCAGCGGCGAAGACATCCCGATTGAAGAGCGTAACGGC AGTGAATTGCTGGAAGTGGGCGGCAAGCGTGTCGGCGCGGATGTTCAGGCGTTCAATCCGGTGTTTGACGTGACCCCGGCAGACCTGATTGACGTGATCG TGACCGAGAAGGGCATTGTTGAGCGCCCGGACGCTGCCAAAATGGCGCAATTGATGTGCCGCAAGCGGTTGCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCAGCAGTTAAGCGGCAAGTTGCAAGCGGCAAGCTTGAAGTCAAGGCTGCGTATCCCGTTAATCGGGTTATGGGCTGCGAACTTGCAGCTTGTTGCTTG AAGCTTGTAGCTGCGAAGCACGTCAATTGTGATAACATCCGGCGGTTTCCGGGGTGCCCTGCAAGGGTTGCCCTTACTGCGCAAATCCGTAGGTTAACTC GTTGATTTGTCGTAAGTCGTTGCGTGGCACGTGGCCAGCGGCGGCGAGCTTCGTTCGTCCCGAATGGATGTGGCGAAGTTTCACCCGAAAAAGGAATCAG GCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAAACAGTCCTACCTCGACTACGCAATGAGCGTAATTGTCGGC CGGGCACTGCCTGATGCGCGCGATGGCTTGAAGCCCGTGCACCGGCGTGTGCTGTTTGCGATGAGCGAACTGAGTAACGACTGGAACAAGCCGTACAAGA
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| Amino Acid Sequence |
>methylthioribose-1-phosphate isomerase
MRDRLLAAEKVKAIDWQGEALHLLDQRILPFEENWLAYTDAEGVAQAIRDMVVRGAPAIGIAAAYGVVLAARDRKAAGGDWVAALEQDFSLLANSRPTAV NLFWALNRMRDRLERCKDNTDALQALEDEAVAIHESDREANLTMAQLGVDVIRRHQGNAQTVLTHCNTGALATGGFGTALGVIRGAWIEGMIEQVYADET RPWLQGSRLTAWELANEGIPVILNVDSAAAHIMKTKGVTWVIVGADRITANGDVANKIGTYQLAVNAMHHGVRFMVVAPSSTIDMDLASGEDIPIEERNG SELLEVGGKRVGADVQAFNPVFDVTPADLIDVIVTEKGIVERPDAAKMAQLMCRKRLH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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