Pseudomonas helleri DSM 29165, TU84_RS05950

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.30.42.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02163
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 387 464 1.1E-97
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 227 352 1.84E-26
Gene3D G3DSA:2.40.10.120 - - - 29 262 8.5E-84
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 201 218 2.2E-51
Pfam PF13365 Trypsin-like peptidase domain - - 97 230 6.7E-35
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 30 262 2.4E-95
Pfam PF13180 PDZ domain IPR001478 PDZ domain 271 360 1.2E-16
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 167 191 2.2E-51
CDD cd00987 PDZ_serine_protease - - 269 358 8.80217E-26
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 127 147 2.2E-51
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 382 468 1.45E-14
SMART SM00228 pdz_new IPR001478 PDZ domain 381 460 1.8E-10
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 264 372 4.9E-28
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 223 240 2.2E-51
Pfam PF13180 PDZ domain IPR001478 PDZ domain 383 463 5.7E-10
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 378 471 5.3E-18
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 106 118 2.2E-51
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 309 321 2.2E-51
FunFam G3DSA:2.30.42.10:FF:000037 Periplasmic serine endoprotease DegP-like - - 267 368 4.0E-33
SMART SM00228 pdz_new IPR001478 PDZ domain 269 351 3.5E-16
CDD cd00987 PDZ_serine_protease - - 382 467 8.00813E-17
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 28 260 1.4E-70
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 239 375 9.4E-11
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 30 467 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.