Pseudomonas helleri DSM 29165, TU84_RS05375

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. DSM 29165 2_617688_39.188, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGCCGACCCGCAAACCCGCGCCTGGATCGACGCACAGGTGCTTCCCCATCTGAGCCGAAGCGAGCCCGAAGCGCCGGTCGCGACTGTACGCCCGGCCTGG GACTTGGCCCTCGATGAAGCGCAAGAGCTGCTGCGAGTCAGCGGTTTCAAACCCGCTGTGCAGTGGCTCAAGCGCGGATCGAGCAGCGCCCACGGCGAGC GGGTGCGGTTTTTTTGGCAGTTGACCCTCGCCCGGCTGTGCTTCCACGCCAAGAAATACGAACTCGCCAAAACCCAGCTCGAAATGCTCGATGAGGTCCT TCACCGCTCAGGTTTACAGGCCTGGGAGCCGGATCTGGTGCTTGAAGTTTTGCGTCTTTTACATCGCTGCTGCGAGCTCTTGCCGCAGAACCACGAAGTG CGAGAACGCAAGGACGAGATGTATCGCAGGTTGTGCCACCTCGATCTTGAAGTGGTACTCGAATAGGCCTCAGGGCCACACACACGCAAGGAAAAACATC
DNA Sequence for Gene
>TU84_RS05375
ATGGCCAAAGAAAGCTCGGTAGCCCCCAAGGAGCGGATCAACATCACGTTCAAACCAGCGACTGGCGGGGCTCAAGAAGAGATCGAACTGCCTTTGAAGC TGTTGGTGGTGGGTGACTATATCCAGCGCTTTGACGGGCGAAAGCTTGAAGACCGCAAGCCTATTGCCATCGACAAAATGACCTTCGATGAAGTGCTTTC CAAGCAAGGGCTGGAGCTGGCCCTGAATGTGCCCAACCGCTTGAACGGCGAAGACAGCACCGATGAATTGGCGATTGCGCTGCGCGTCAGCGCGATGAAG GACTTCAACCCGGCGAGCCTGGTTGAGCAAATCCCTGAACTGAAAAAACTGATGGAGCTGCGTGATGCCCTGGTCGCACTTAAAGGCCCATTGGGCAACG CGCCGAGCTTTCGCAAGGCGATTGAAGGCGTACTGGCCGACGACGTCTCACGCGCACGGATACTGAGCGAACTGGATCTGCTTGTCGCTCCGGCAGCGGA CGTTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCCCCCATCAGTCAAGGAAGCCACACAATGAGCAGCAGCGCCGCACAACTAAAAGACGATAAAAGCACTTCTTACAGCGTTCTGGACGACATCATCGCG CAAACCCGACTCACGCCCGAAGACGACGCTTATGGCATCGCCAAGCGCGGCGTAGCGGCGTTTATCGAAGAACTGCTGAAACCGCAAAACCAGGGCGAGC CGGTCAAAAAAGCCCTGGTTGATCGCATGATTGCCGAGATCGACGCCAAGCTCAGCAACCAGATGGACGAAATCCTCCACCACCCGTCCTTCCAGTCGCT GGAGTCCGCGTGGCGTGGCTTGCAGTTGTTGGTCGATCGCACCAACTTTCGCGAAAACATCAAGATCGAAATCCTCAACGTCTCGAAAGAAGACCTGCTG GACGACTTCGAAGACTCGCCCGAGGTCATGCAATCGGGCCTCTATAAACATGTGTACACCGCTGAATACGGGCAGTTCGGTGGTGAGCCGGTGGGCGCCA
Amino Acid Sequence
>type VI secretion protein
MAKESSVAPKERINITFKPATGGAQEEIELPLKLLVVGDYIQRFDGRKLEDRKPIAIDKMTFDEVLSKQGLELALNVPNRLNGEDSTDELAIALRVSAMK DFNPASLVEQIPELKKLMELRDALVALKGPLGNAPSFRKAIEGVLADDVSRARILSELDLLVAPAADV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site