Pseudomonas helleri DSM 29165, TU84_RS24990
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 27_15530_46.0382, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGACAGGGAACCGTAAAGCTGCACCTCAATGCGTCGCACCTGTTGCAGTTGGTCGCGTTCGCGCAACCCCTGCACAAACAGCGCAGCAGCCCGCATG GGCCCCACGGTGTGGGAGCTGGAAGGGCCAATGCCGATCTTGAACAGGTCAAACACGCTGATAGCCATGGGGACGAGCCTCGTAATGAGTGCTCGCATCA TGGTCGGTTTCCAGCCCCTGAAAACGTCCAGCAACGACTCGCTATTGTCTGCCAGCGCCGTCGCCGTTTTATGCGGATCAGACGCGGGAAAAGTGCGGTT TTTTGGGAGGAAACGTCCAAATGCGACCTCGCAGGTATCAGATACGACCCTGCCTGTACTGGATGCGACGCGGGCGGTAGGCGTTTGATTTTGGCTGTTA CATGATCAGTCTCGACTCGATTGCCAGATGCCAACCGGCATCACCCGAGGGGGCGGCTTTTCGATCGAAAACTGCCACCCAGACACACAGGAGTCGTTGC
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| DNA Sequence for Gene |
>TU84_RS24990
ATGAAACATTCCTACCCTTTGCTGTTGGCTGCCGTACTGAGTCTGCCCGCCATCGCCCAGGCCGCCGAGCCTGCGCAGTGCAGCACGGTTAATTTTTCGG ACGTGGGCTGGACCGATATCACGGTCACCACGGCGGTCACCAGCGCAGTACTGGATGCACTGGGCTACAAAACCAAAACCACCATGATTTCGGTGCCGGT GACGTACAAGTCCCTGGCCGATGGCAAAAACATGGACGTCTTTTTGGGCAACTGGATGCCCACCATGGAAAACGACATCAAGGCTTACCGCGATGCGGGC ACCGTTGAAACGGTGCGCGCCAATCTGGAAAACGCCAAGTACACCCTCGCCGTACCGCAGGCGCTGTATGACAAGGGCCTTAAAGACTTCGCTGACCTGC CTAAATTCAAGAAAGAACTGGACGGCAAGATCTACGGGATCGAGCCGGGCAACGACGGCAACCGCACGATTCAAAGCATGATCGACAAGAACGCATTTGG CCTCAAGGACGCAGGCTTCAAGGTGGTTGAGTCGAGCGAAGCCGGGATGTTGTCGCAAGTCGAACGCGCTCAACGGCGCGGCACCGACGTGGTGTTTTTG GGCTGGGAACCGCACCCCATGAACACCCGCTTCAAGATGAAGTACCTCACCGGTGGCGATGATTTTTTTGGCCCCAACTTCGGCCAGGCCACCATCTACA CCAACACCCGCAAAGGCTACACACAGGAATGCAGCAACGTTGGCCAGTTGCTGAAAAACCTGGTGTTCACCCTCGACATGGAAAGCACGCTGATGGGCAA GGTGCTGGACGAAAAGATCAAGCCGGATGTGGCTGCCAAAGCCTGGCTTAAACAGAACCCGCAGGTGCTCGACACCTGGCTCGCGGGCGTGACCACGGTT GATGGCAAGCCGGGGCTTGAGGCGGTCAAGGCCAGCCTCGCGAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCGGACGCCAGGCGGCTTGCCGCGCTGGCTCCGTTTTCACTCCACTTGCATGCGGACGTTCATACCATGCTGATAGATCACAAAATCCCGTTGGGCGA GTACATCGCCGACTTCGTCGACTGGCTGACCAAACATGGCGCCAATATCTTCGATGCCATTGCGACCACACTCGAAGCCATGATCCATGGCGTGACGTTT GCGCTGACCTGGTTCAACCCGCTGGCGTTTATCGGGTTGATCGCGTTGTTTGCCCACCTGATTCAACGCAAGTGGGGGCTTACGGTCTTTGTTGCGTTGT CGTTTTTGCTGATCCTCAACCTGGGGTATTGGCAAGAGACTATGGAAACCCTGGCGCAGGTGGTGTTTGCCACCTTTGTGTGCGTGATCATCGGTGTGCC GCTGGGCATTGTCGCCGCGCATAAACCGGCGGTGTATACGTGCATGCGCCCGGTGCTGGACTTGATGCAAACCGTGCCGACGTTTGTGTACCTCATCCCT
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| Amino Acid Sequence |
>glycine/betaine ABC transporter substrate-binding protein
MKHSYPLLLAAVLSLPAIAQAAEPAQCSTVNFSDVGWTDITVTTAVTSAVLDALGYKTKTTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKAYRDAG TVETVRANLENAKYTLAVPQALYDKGLKDFADLPKFKKELDGKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKVVESSEAGMLSQVERAQRRGTDVVFL GWEPHPMNTRFKMKYLTGGDDFFGPNFGQATIYTNTRKGYTQECSNVGQLLKNLVFTLDMESTLMGKVLDEKIKPDVAAKAWLKQNPQVLDTWLAGVTTV DGKPGLEAVKASLAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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