Pseudomonas helleri DSM 29165, TU84_RS24960
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 27_15530_46.0382, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCTTCGTGGCCCCGACCGTGTTCACTGACTGCACCGACGAGATGACCATCGTCAAAGAAGAAATCTTTGGCCCGGTGATGAGCATCCTGACGTACGAC ACCGAAGAAGAAGTGATCCGCCGCGCCAACGACACCGAGTTCGGCCTGGCCGCCGGTATCGTCACCAAAGACCTGAACCGCGCGCACCGCGTGATTCATC AGCTGGAAGCGGGCATTTGCTGGATCAACGCGTGGGGCGAGTCCGACGCAAAAATGCCGGTGGGCGGTTACAAGCAATCGGGCATTGGCCGTGAAAACGG CATCAGCTCGCTGGCTCAGTACACCCAAATCAAATCGGTACAGGTAGAGCTGGGCGACTACGTTTCGGTGTTCTAAGCCCTGTGGGAGCGGGCTTGCCCG CGATGGAATCGCTGCGGTCTGCCTGACAGACCGCGTCGCATGAATCGCGAGCAAGCCCGCTCCCACGGTTTGTGCCACAACTTCAAAGAGGGTGCATTTT
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| DNA Sequence for Gene |
>TU84_RS24960
ATGTCCCAAGAATTCGACTACATCATCATTGGTGCCGGCTCTGCCGGTAACACCCTGGCGACCCGTCTGACTGAAGACCAAGGCGTCACCGTGCTGCTGC TTGAAGCAGGCGGCCCGGACTACCGTTTCGACTTCCGTACCCAAATGCCTGCCGCGCTGGCGTTCCCGCTGCAAGGCCGTCGCTACAACTGGGCATTTGA AACCGACCCGGAACCACACATGGACGGCCGCCGCATGGAATGTGGCCGTGGCAAGGGCCTGGGCGGTTCGTCGCTGATCAACGGCATGTGCTACATCCGT GGTAACGCGATGGACTACGACGGCTGGGCAAAAAACCCTGGCCTGGAAGACTGGTCGTACCTGGACTGCCTGCCGTATTTCCGCAAGGCAGAAACCCGCG ACATCGGCCCCAACGATTACCACGGTGGCGATGGCCCGGTCAGCGTGACCACGCCTAAAGCCGGTAACAACGTGCTGTTCCACGCCATGGTTGAAGCAGG CGTGCAAGCCGGTTACCCGCGCACCGAAGACTTGAACGGCTACCAGCAAGAAGGCTTCGGCCCGATGGACCGTACCGTGACGCCGAACGGCCGTCGCGCC AGCACCGCTCGAGGTTATCTGGACATCGCCAAACAGCGCCCGACGCTGACCATCGTCACCCACGCCCTGACCGACAAGATTATCTTTGAAGGCAAGCGTG CGGTCGGCGTGCATTACATGACCGGCGACAACCACGTGCGCATTGAAGCCAAGGCGCGCAAAGAAGTCCTGCTGTGCAGCGGCGCCATCGGTTCGCCGAC TGTGCTGCAACGCTCGGGTGTAGGCCCGGCCGAACTGCTCAACAGCCTCGACATCCCGGTGGTGCATGACCTGCCGGGTGTTGGCCAGAACCTGCAAGAC CACCTTGAGCTGTACCTGCAATATGCGTGCACTCAGCCGGTGTCGCTGTACCCGTCGCTGCTGTGGTGGAACCAGCCGGCCATCGGTGCCGAGTGGCTGT TCGCAGGCAAAGGCATTGGCGCCAGCAACCAGTTCGAAGCCGGTGGTTTTATCCGCACCCGCGAGCATTTCGACTGGCCGAACATTCAGTACCACTTCTT GCCGGTAGCGATTAACTACAACGGCAGCAACGGTGTGAAAGAGCACGGCTTCCAGGCGCACATGGGCTCCATGCGCTCGCCGAGCCGTGGCCGGGTCAAC GTGAAGTCCCGCGACCCGCGTGAATACCCGAGCATCCTGTTCAACTACATGTCCACCGAGCAAGACTGGCAAGAGTTCCGCGACGGCATCCGCCTGACCC GTGAAATCATGCAGCAGCCGGCACTGGACGCTTACCGTGGCCGCGAAATCAGCCCGGGCATCGACAAGCAGACCGACGAAGAGCTGGACACGTTTATCCG TGAACACGCCGAAACGGCCTTCCACCCGTCCTGCTCGTGCAAAATGGGCACCGACGAGATGGCCGTGGTTGACGGCGAAGGTCGCGTGCATGGCCTGCAA GGCCTGCGTGTGGTCGATGCCTCGATCATGCCGTTGATCACCACCGGTAACCTGAACGCGCCGACGATCATGATCGCCGAGAAAATCGCCGACAAGATCC GTGGCCGCCAGCCATTGCCGCGCAGCACCGCCGACTACTACGTCGCAGGCGATGCCCCGGTGCGTGGCAAGCCTCTGCGTGAAGTGAGCCGTACCGCGCA GTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACCGCAATAACTGTAGGAGCGAGCTTGCCTCGCGATCTTTTGATCGTTTAAAAGATCGCGAGACAAGCTCGCTCCTATGTATGGACTCGCCCCCCACTG TCAACCCGCTTTTGCCCACTGACACCCGGCTGCATCTATGTATAAGGCCTATTCTAGGAAGCCATAATCGGCTTCTG
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| Amino Acid Sequence |
>choline dehydrogenase
MSQEFDYIIIGAGSAGNTLATRLTEDQGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAFETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIR GNAMDYDGWAKNPGLEDWSYLDCLPYFRKAETRDIGPNDYHGGDGPVSVTTPKAGNNVLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPNGRRA STARGYLDIAKQRPTLTIVTHALTDKIIFEGKRAVGVHYMTGDNHVRIEAKARKEVLLCSGAIGSPTVLQRSGVGPAELLNSLDIPVVHDLPGVGQNLQD HLELYLQYACTQPVSLYPSLLWWNQPAIGAEWLFAGKGIGASNQFEAGGFIRTREHFDWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRVN VKSRDPREYPSILFNYMSTEQDWQEFRDGIRLTREIMQQPALDAYRGREISPGIDKQTDEELDTFIREHAETAFHPSCSCKMGTDEMAVVDGEGRVHGLQ GLRVVDASIMPLITTGNLNAPTIMIAEKIADKIRGRQPLPRSTADYYVAGDAPVRGKPLREVSRTAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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