Pseudomonas helleri DSM 29165, TU84_RS23190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 20_98278_27.0327, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAACTTCGTCGATAACCAGGTCAACCCTAAAACCGGCACCATTCGCGGTCGCGCGGTGTTCGACAACACTGATGGCAGCTTCACCCCGGGCCTGTATGC GCGCCTCAAACTGGTCGGTAGCGGCACCTACGAAGCCGTGCTGATCAATGACGAAGCAGTCGGCACCGACTTGGGCAAGAAGTTCGTATTGGTGATGGAC GGTAATAACAACACCACCTACCGGGCCATTGACCTGGGGCCAAAAATAGAAGGCCTGCGCATTGTCCGCAGCGGTCTCAACAAAGACGACACCATCATCG TCAAGGGCCTGCAACGGGTGCGTCCTGGCTCGCCGGTGACCCCTGAAGTCATCCCGATGGCCAACGAACAAACCCTCGCCGCACTGGCGCAACAACGACA CGCCCTGGAAGCCAGCAACCTGTTACCTGCAACGCCCGCTACCCCTGCGGCGAAGCTGGCCAGCGTTGCGACTCCTCGCGGTTAAGGGACGACAACTTCG
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| DNA Sequence for Gene |
>TU84_RS23190
ATGAATTTTTCCCAGTTCTTCATTCAACGGCCGATTTTCGCTGCCGTACTTTCGCTGTTGATTTTGATTGCGGGCGGCATTTCGCTGTTCCAGTTACCGA TCAGCGAATACCCGGAGGTCGTACCGCCAACGGTGGTGGTGCGCGCCAACTTCCCGGGTGCCAACCCTAAAGTGATCGGTGAAACCGTGGCGGCGCCACT GGAGCAGGCCATCACCGGTGTCGAACACATGTTGTACATGTCTTCGCAATCCACCGCTGACGGCAAACTCACGCTGACCATTACCTTCGCCCTGGGTACA GACCTGGACAACGCGCAGGTGCAGGTGCAAAACCGTGTAACCCGCACCGAGCCCAAGTTGCCCGAGGAAGTGACGCGTATCGGTATTACGGTAGACAAAG CATCGCCTGACCTGACCATGGTGGTGCACTTGACCTCACCGGATCAGCGCTACGACATGCTCTACCTGTCCAACTACGCGATCCTCAACATCAAGGATGA GCTGGCCCGTCTCGGCGGCGTGGGTGACGTGCAGTTGTTCGGCATGGGCGACTACTCGTTGCGTGTGTGGCTTGATCCGAACAAAACCGCTTCGCGCAAT CTGACCGCCACTGACGTGGTCAACGCCATTCGCGAACAGAACCGCCAGGTAGCAGCCGGTGCACTGGGTGCGCCCCCTGCCCCCAACGCCACCAGCTTCC AGCTGTCGGTGAACACCCAAGGCCGTCTGGTGACCGAGGAAGAGTTTGAGAACATCATCATTCGCGCAGGCGATGACGGTGAAATCACTCGTTTGAAGGA CATTGCCCGGGTTGAATTGGGCTCAAGCCAGTACGCCTTGCGCTCCTTGCTCAATAACCAGCCCGCAGTCGCGATCCCAATTTTCCAGCGTCCTGGCTCG AACGCCATCGATATCTCGAACGAAGTTCGCGCAAAGATGGACGAGCTGAAGAAGAGCTTCCCGCAGGGCATGGACTACAGCATCGTGTATGACCCGACGA TCTTCGTTCGTGGTTCTATCGAGGCGGTGATTCACACCCTGTTCGAAGCACTGATTCTCGTGGTGCTGGTGGTGATCCTGTTCCTGCAGACCTGGCGCGC CTCGATCATTCCGTTGGCGGCTGTCCCGGTGTCGTTGATCGGTACCTTTGCGGTCATGCACATGTTCGGCTTCTCGCTGAATGCCCTGTCGCTGTTCGGT TTGGTACTGGCCATCGGTATCGTGGTCGACGATGCCATTGTTGTGGTGGAAAACGTCGAGCGAAACATCGAACTTGGGCTCGAACCGGTAGAAGCCACCA AGCGCGCCATGCGCGAAGTGACCGGTCCGATCATCGCCACAGCGCTGGTACTGTGCGCCGTGTTTATTCCGGCTGCGTTCATCTCCGGCCTGACCGGGCA GTTCTATAAACAGTTCGCGCTGACCATTGCGATCTCGACGGTCATCTCGGCCTTCAACTCACTGACCTTGTCGCCAGCACTGGCAGCAGTGTTGCTTAAA GGCCATCATGCGCCCAAAGACCGTTTCACACGGGTTCTGGACAAGCTATTCGGTGGCTGGTTGTTCCGCCCGTTCAACCGATTCTTTGAGCGTGCCAGCC ACGGCTATGTCGGCACTGTCGCCCGGGTTATCCGCAGCAGCGGTATCGCCTTACTGGTGTACGCAGGCCTGATGGTGCTGACCTTCTTTGGTTTCGCCCA CACCCCAACCGGTTTCGTGCCGGGGCAAGACAAGCAGTACCTGGTGGCCTTCGCTCAACTGCCGGATGCGGCGAGCCTTGACCGTACCGAAGATGTGATC AAGCGCATGTCCGACTTTGCCCTCAAGGAACCGGGCGTTGCCAACTCCATCGCCTTCCCGGGTCTGTCGATCAACGGCTTCACCAACAGCCCCAACAGCG GCATCGTGTTCGTGGCACTCAAGGACTTTGACCAGCGCAAAGACCCAAGCCAGTCAGCTGCGGCCATTGCGGCAACCCTGAATGCCAAGTTCGGTGGCAT TGAAGAAGCCTACATTGCGATCTTCCCGCCGCCGCCTGTGCAAGGTTTGGGGACCATTGGCGGTTTCCGTTTGCAAGTCGAAGACCGTGGTGGTCTGGGC TATGAGGCGCTCTATAAAGAAGTACAGAACGTCATCGCCAAAAGCCACAACGTGCCAGAACTGGCCGGCCTGTTCACCAGCTACACCGTGAACGTGCCGC AAGTAGACGCCGCAATCGATCGTGATAAAGCCAAGACCCACGGCGTGGCTGTGAGCGACATCTTCGACACCCTGCAGGTGTATCTGGGTTCGTTGTATGC CAACGACTTCAACCGCTTCGGTCGTACCTATCAGGTCAACGTTCAGGCCGAGCAACAGTTCCGCCTCGAACCCGACCAGATCGGCCAGTTGAAAGTGCGT AACAACAAAGGCGAGATGATCCCGCTGGCGACCTTCATCAAGGTCAGCGACACCTCGGGGCCGGACCGCGTGATGCACTACAACGGCTTTATCACTGCCG AAATCAACGGTGCTGCGGCCCCAGGCTACAGCTCGGGTCAGGCTGAAGCAGCCATCGACAAACTGCTCAAGGAAGAACTTCCGAACGGCATGACGTACGA ATGGACCGACTTGACCTATCAGCAGATCCTGTCTGGCAACACCGCGCTGTTCGTGTTCCCGCTCTGCGTATTGCTGGCCTTCCTGGTACTGGCGGCTCAA TACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTACCGATGACCTTGCTGTCGGCCATCACCGGGGTGATTGCCTCGGGGGGTGACAACAACA TCTTTACCCAGATCGGCTTAATCGTACTGGTGGGACTGGCGTGTAAAAACGCGATTCTGATCGTCGAATTTGCCAAGGACAAACAAGCCGAAGGCCTCAG CCCGCTGGCTGCGGTGCTGGAAGCCTGCCGTCTGCGTCTGCGCCCGATCCTGATGACCTCCATCGCCTTCATCATGGGTGTGGTGCCGCTGGTGCTGTCC ACTGGCGCGGGTGCTGAAATGCGCCATGCGATGGGTGTTGCAGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGCCTGCTGTTGACGCCTGTGTTCT ATGTGTTGATCCGCAACTATGTTGAGCGCAGTGAAGCGCGCAAAGCGGCGCGGCACCTCAAGTTGGAGTCGCAACAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTCAAAGTTTTCCTTCCCAGCCTTCTGGTGCTGGCCCTGAGTGCTTGCGCCGTTGGCCCGGACTACAAAACCCCGGCCACCGAGCCTGCACAGATCAG CGCTGATAACCTCAAGGGCTTTGACCGGGCACATTTTCAAGGGATCTGGTGGCAGCAGTTCGACGACCCGACCCTGAACAAGCTGGTCGCTCAGTCGCTG GCAGGCAACCGTGAGTTGCGCGTGGCCTTTGCCCGTCTGCGGGCAGCCCGCGCCATTCGTGATGACGTCAGCACAGAAACCATGCCGACCATCACCAGCC GTGCCAGCAGCGATGTAGGCAAGGGGCAAGTGCCGGGCACTACTGAAAAGCGCGTCAACAGTGAGCGCTACGATTTGGGCCTGGACATGGCCTGGGAAGT CGACCTGTTTGGCCGTATCCAGCGTGAGCTGGAGGCCAGCGATGCCGACGAACAGGCCGCAGCAGCAGACCTGTATCAGTTGCAAGTGACCATGATTGCC
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| Amino Acid Sequence |
>transporter
MNFSQFFIQRPIFAAVLSLLILIAGGISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVEHMLYMSSQSTADGKLTLTITFALGT DLDNAQVQVQNRVTRTEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVNAIREQNRQVAAGALGAPPAPNATSFQLSVNTQGRLVTEEEFENIIIRAGDDGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIDISNEVRAKMDELKKSFPQGMDYSIVYDPTIFVRGSIEAVIHTLFEALILVVLVVILFLQTWRASIIPLAAVPVSLIGTFAVMHMFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLEPVEATKRAMREVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK GHHAPKDRFTRVLDKLFGGWLFRPFNRFFERASHGYVGTVARVIRSSGIALLVYAGLMVLTFFGFAHTPTGFVPGQDKQYLVAFAQLPDAASLDRTEDVI KRMSDFALKEPGVANSIAFPGLSINGFTNSPNSGIVFVALKDFDQRKDPSQSAAAIAATLNAKFGGIEEAYIAIFPPPPVQGLGTIGGFRLQVEDRGGLG YEALYKEVQNVIAKSHNVPELAGLFTSYTVNVPQVDAAIDRDKAKTHGVAVSDIFDTLQVYLGSLYANDFNRFGRTYQVNVQAEQQFRLEPDQIGQLKVR NNKGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEAAIDKLLKEELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIASGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQAEGLSPLAAVLEACRLRLRPILMTSIAFIMGVVPLVLS TGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNYVERSEARKAARHLKLESQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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