Pseudomonas helleri DSM 29165, TU84_RS23005
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 19_103977_38.1097, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTCATGGCACTGACAGTTGAACACAAAGCAGAAATCGTAAAAGACTACCAGCAAGCTCCAGGTGATACTGGTTCTCCAGAAGTGCAAGTTGCACTGCT GACCTTTAACATCAACACGCTGCAAGGTCACTTCAAGGCCAACGGTAAAGATCACCACTCCCGTCGTGGTCTGATCCGCATGGTAAACCAGCGTCGTAAG CTGCTGGACTACCTGAAAGGCAAGGACATCAGCCGTTACGCTGCGCTGATCGCTCGCCTGGGTCTGCGTCGCTAATAGCGATGTTGCTAGAGGCTGGTTG TTTGTTGCGCGTCTGTGGGGTTCCCACGGGCGTGCGGCAGGCTTCCAGCCTCAAGTTTTATCTGGACCAGACGGATTCTTACGAAAGCTCACCCTAGCGG CTGCTTTCGTAAGCATCTTGAGTCGGGCACGCCCCGGCGGTGCACACGTTTTTCGCAAGAAACCCGTTCCCCAAGAGTCACAAAGAGAAGGTAGGACACC
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| DNA Sequence for Gene |
>TU84_RS23005
GTGAACCCGGTTATCAAAAAATTCCAGTTCGGTCAGTCGACCGTCACCCTCGAGACTGGCCGTATCGCCCGTCAGGCTTCCGGCGCAGTATTGGTCACCG TTGACGACGACGTCAGCGTGTTGGTGACCGTAGTCGGTGCCAAACAAGCTGATGCAGGCAAGGGCTTCTTCCCTCTGTCTGTTCACTACCAAGAAAAAAC CTACGCCGCGGGTAAAATCCCGGGCGGTTTCTTCAAGCGTGAAGGTCGCCCTTCCGAGAAAGAAACCCTGACCTCGCGTCTGATCGACCGTCCGATCCGC CCGCTGTTCCCGGAAGGCTTCATGAACGAAGTGCAGGTTGTCTGCACCGTTCTGTCCACCAGCAAGAAAACCGATCCGGACGTCGCTGCGATGATCGGTA CCTCGGCTGCGCTGGCCATCTCCGGTATTCCTTTTGATGGTCCAATCGGCGCAGCCCGCGTTGCTTACCACGAAAGCACTGGCTACCTGTTGAACCCGAC TTACGAGCAACTGGCCGCTTCGAGCCTGGACATGGTTGTTGCCGGTACGTCGGAAGCCGTGTTGATGGTTGAATCGGAAGCCAAAGAGCTGACCGAAGAC CAGATGCTGGGCGCGGTACTGTTCGCTCACGACGAGTTCCAGGTTGTTATCCAGGCCGTTAAAGAACTGGCTGCTGAAGCTGCCAAGCCAACGTGGGACT GGGCTGCTGCCCCAGAAGCCACCGCACTGCTGGGCGCTATCCGTGCCGAGTTCGGCGAGGCGATCTCCCAGGCTTACACCATCACCATCAAGGCCGACCG TTACGCTCGTCTGGGCGAACTGAAAGACCAAGTGGTTGCCAAGCTGTCCGGTGAAGAAGGCCAGCCTTCTGCCAGCGAAGTTAAAGCTGCCTTCGGCGAA ATCGAATACCGCACCGTTCGCGAAAACATCGTAAACGGCAAGCCGCGTATCGATGGCCGTGACACCAAGACTGTTCGTCCTCTGAACATCGAAGTTGGCG TACTGCCAAAAACTCACGGTTCGGCACTGTTCACCCGTGGTGAAACTCAGGCGCTGGTGGTTGCAACGCTGGGTACTGCCCGTGATGCACAACTGCTGGA TACCCTGGAAGGCGAGAAAAAAGACCCGTTCATGCTGCACTACAACTTCCCTCCGTTCTCGGTAGGTGAGTGTGGTCGTATGGGTGGTGCAGGTCGTCGC GAAATCGGTCACGGCCGTCTGGCACGCCGTTCGGTTCAGGCCATGCTGCCTGCTGCTGACGTGTTCCCGTACACCATCCGTGTGGTATCGGAAATCACTG AATCCAACGGTTCCAGCTCCATGGCTTCGGTCTGTGGTGCATCCCTGGCACTGATGGACGCTGGTGTTCCGATGAAGGCACCGGTTGCCGGTATCGCCAT GGGCCTGGTTAAGGAAGGCGAGAAGTTCGCAGTTCTGACCGACATCCTGGGTGACGAAGACCACCTGGGCGACATGGACTTCAAAGTAGCCGGTACCTCC AAAGGTGTTACCGCGCTGCAGATGGACATCAAGATCAAAGGCATCACCGAAGAAATCATGGAGATCGCCCTGGGCCAAGCCCTGGAAGCTCGCCTGAACA TCTTGGGCCAGATGAACCAGATCATCGGTCAGTCGCGTAACGAACTGTCGGCTAACGCGCCGACCATGATCGCGATGAAAATCGACACCGACAAAATCCG TGATGTTATCGGTAAAGGCGGCGCGACTATCCGTGCAATCTGTGAAGAAACCAAGGCTTCGATCGACATCGAAGACGACGGTTCGATCAAGATCTTCGGC GAGTCCAAAGAAGCAGCAGAAGCGGCTCGTCAGCGCGTTCTGAGCATCACCGCTGAAGCTGAAATCGGCAAAATCTACGTGGGTAAAGTTGAGCGCATCG TCGACTTCGGCGCATTCGTCAACATCCTGCCAGGCAAAGACGGCCTGGTTCACATCTCGATGCTGAGCGATGCTCGTGTTGAGAAAGTGACTGACATTCT GAAAGAAGGTCAGGAAGTGGAAGTACTGGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTGTCGATCAAAGACGTAGCAGCTGCCAAGGCGTCGCAA GCTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCTGCGAACGCCTGCTTTGAAAAAAGGATCCTTCGGGATCCTTTTTTTATGCCTGCACAAAAAACAGTGCAAAAGGCCATGATCGAAAACCCGCAACT TGCATGCTGATTTGAATGGCGTCATGCAATCTGCACGACAGGCTAAAACTGATCGTTACGTAAGTCATTGATAATAAAGGATTTTATTGTTTTAAAAAGT TGGCACAGGCCCTGCAATAGTACTGGTAACCCTGCTGCTGTGAGACGGCGCAGATTTTTAAGAAGACAGGAGTTACTTGTATGAAGAAGTTCGCTATTGC TGCCGCAACTGCCACCGCTCTGACCATGACTCTGGCCAACGCTGCGTTCGCAGCTCAAGCAACGACTCAAGCGCCAATGGTTGTTGCCGCGGGTGAAGTC ACCAAAGCCAAGGAAGCTACTTCTGATACCTGGATCACGACCAAAGTTAAATCTGACCTGCTGACCGAAAAGGGCATTCCAGGTTCAGACATCAAAGTTG
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVLSTSKKTDPDVAAMIGTSAALAISGIPFDGPIGAARVAYHESTGYLLNPTYEQLAASSLDMVVAGTSEAVLMVESEAKELTED QMLGAVLFAHDEFQVVIQAVKELAAEAAKPTWDWAAAPEATALLGAIRAEFGEAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPSASEVKAAFGE IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSVQAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTS KGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ESKEAAEAARQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASQ A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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