Pseudomonas helleri DSM 29165, TU84_RS21075
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 15_131624_46.8091, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGCCTCGGCCCTCACCTTTTTTGAGCAGCGTGCCCACGCGCTCCTTCATCTCGCGCGCCGCCTTGTTGGTAAAGGTCATGGCGACGATGTACTGGGCAC GGATGCCGCAGTTCTGAATAAGGTGAGCGATTTTTCGGGTAATCACGCTGGTTTTGCCGGAGCCTGCACCGGCGAGCACCAAAAGAGGGCCGCCGACGTA GCTCACGGCTTCTTGCTGCCGGGGATTGAGTCGGGACATGACGAAATTAAAGATCGCTTGCAAAAAGGGCGGGCATTTTAACAGGCTGAGCAGATATTGC TGCCACTCTGCGACAGTGTGACGTAGCCCTCTATCTAAATTTGCCGCTTTTGCTACTTTGCCGCAGGATACCTGACCGTTTAAGTCAGTCGTTCGATAAG CGTTTGCTGGGTGTATTTGATAACGGGTGTCATTTGCCATTACGTAATGGCACGTCATAATGCCCATCGCCTGAATTTATGCAGAGTCTAGGGAGCTAGC
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| DNA Sequence for Gene |
>TU84_RS21075
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGCTACTGGCCAAAGAGCCGACTTGGGCAGCGTTATTGCGCGAGTGTCTGGCGCCCATGGGAAACGCGG CCCTGTTGATGTGTGCCCCGAACTGGGAGTCGGTCAGCTTCCTGTTCGAACACACGCAAAACGCGTTGTTGCTCACCACCCCAGCCCTGCAACCTGCGGC AGGTCGATGTCGTTTATCCACAGTTTTGTTGCTGGAAGCCGAGCCCGACACCCCGCCGCAGGGTGTCAGCGACTGGTGGGTCCGCCCAACGCTGACCACC GATGTGCTGCGCCGCAGCCTGCGCCACGTGCAGGAACGCGGCGTCCTCGAACAGACCTTGCACCGTTTGGCCAAAGAAGACCCCCTGACTGGTATCGCCA ACCGCCAGGGGTTTCAAACGCTGCTCGCCGTGCGGCTGGCTGAAAACGATGGCCACGGCCTCGCGCTGGGGCATCTGGACCTCGATAACTTTCGCCATGC CAACGACGCCTTGGGGCATCAGGCCGGCGACCGCCTGATCCTGCAAGTGGTGGCGCGCCTTAAAAGCCGGCTCGAAGCATGCGATCAACTGGCCCGCTTG GGCAGCGACGAATTCGCCTTGCTGATCGACACCCGCCGTGCCCCTGAGCGCGCGGCCTGGATGGCTGAACGCATTACCGAAGTGATGGCCGAGTCTTACT GGATCGACGGCGAAAGCCTGTTGATCGGCTGCAGCCTGGGCATCGCCCATGCCCGCGCCAACGCCGGTGCCGACCCGTTGATGTGGCACGCGCACATTGC CATGCAGCAGGCCAAAAGCACCCAGGGCTGCACGTATCACGTGTTCGATGAACGCATTAACCGCAACGCCCGCAGCCTCGCCGACCTCGAAAGCGAGTTG CGCCGCGCCTTGCGCCGTGACGAACTGGAATTGCACTACCAGCCACGCCTGGACCTGGACACCGGCCACATAGTCGGGCTCGAAGCCTTGGTGCGCTGGC GCCATGGTGATCGCGGCCTGCTGGCGCCCAGCGAATTCGTGCCGTTGGCCGAACAGAGCGGGCTGATCGTGCCGCTGGGCTACTGGGTTATTTCGCGCGC ACTGCGTGACATGCAAGTGCTGCGTGAAAACGGCTGGACGGCCTTGCACATGGCCATCAACTTGTCGTTTCGCCAATTCCAGGACAGCAAACTGCTGATC ACCCTCAGCCGCTTGATCGCCGAGCACGGAATCGACGCCCGCTGGTTGGAATTTGAACTGACCGAAACCGCCGTCATGCGCCGCAGCGACATGGTCAAGC AGACCATGGACGCCTTGGGACGGCTGGGCGTGCGCTTTTCACTGGATGACTTCGGCACCGGCTTCTCATCGTTTGTGCACCTCAACAGCCTGCCGATTGC CCTGCTGAAGATCGACAAAAGCTTTGTCGGCGGCATGGAAGAGCGCGAAGAAAACCGCAAACTGGTCCACGCCATGCTCAACCTGGCGCAGAACCTCAAC CTGCAAGTGGTCGCCGAAGGCGTAGAAACCCGCGCGCAACTGGCACTTTTGCGCGAATTTGGCTGCGATCAAGTACAAGGCTTTCTGATCAGCAAACCGC TGCCGATGCCTGAACTGATCCCGTTTTTGGCGGCGGCCCACACCGCCTCGGCGTCGAAGGCAGCTCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGCTTGCCACCCCGTCTTCGACGCCGCGCTGTCGCGTATCAAACAGGACAGCGAGTATCTTCAGCATCCCCCAATCGGTTCCCTCTCCTTCGGGAGAGG GCTAGGGTGAGGGGTGCTCTTGATTAGAGAGGCTTTTATCTACATATCCATTGCTGCGGCAACGGCCAATTAGGGTTCCGCCCTTACGCCGCGCTGCGCT TGAGCATGCGCCGCATCTTCCATTCGAAGGCCAATGTCAGGCCCACCGAGGCAAACGCCAGGCCCATAGCCAAGCCCCACCACACGCCTGTCGGGCCCCA GCCGAAGGTAAAGGCCATCAGCCAGGCGGTCGGGGCGCCGATCACCCAGTAGCAGAACAGGCCGACCAAGAAGGTGGTCTTGGCATCCTTGAGCCCACGG ATCGCGCCCATGGCGATGGTTTGCGTGCCATCAAACAATTCAAACCAGGCCGCCACTGCCAGCAGGCTGACCGCCAGTTCAAAGACGGGCCGGAAGGCCG
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| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLAKEPTWAALLRECLAPMGNAALLMCAPNWESVSFLFEHTQNALLLTTPALQPAAGRCRLSTVLLLEAEPDTPPQGVSDWWVRPTLTT DVLRRSLRHVQERGVLEQTLHRLAKEDPLTGIANRQGFQTLLAVRLAENDGHGLALGHLDLDNFRHANDALGHQAGDRLILQVVARLKSRLEACDQLARL GSDEFALLIDTRRAPERAAWMAERITEVMAESYWIDGESLLIGCSLGIAHARANAGADPLMWHAHIAMQQAKSTQGCTYHVFDERINRNARSLADLESEL RRALRRDELELHYQPRLDLDTGHIVGLEALVRWRHGDRGLLAPSEFVPLAEQSGLIVPLGYWVISRALRDMQVLRENGWTALHMAINLSFRQFQDSKLLI TLSRLIAEHGIDARWLEFELTETAVMRRSDMVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGMEEREENRKLVHAMLNLAQNLN LQVVAEGVETRAQLALLREFGCDQVQGFLISKPLPMPELIPFLAAAHTASASKAAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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