Pseudomonas helleri DSM 29165, TU84_RS20665
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 15_131624_46.8091, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGTTAATCAGCGCTTCCCAAAACCCCTGCAAGGGCTTTACATTGGCACTTACAGAGACATTGGGCAGGGTGAGTGAAAAATCAGCGCTTCCCTAATGG CTGGTGATTTTTTAAACTGTCGAGTCCGCTCGCCCATCCGGGCAGCGCGCACATTGTATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTGTCTACCAAGCGTGCCCGTCAACTGGCCACCGGTGGTAAAGAGCCTCTGGTTCAGTGGG AAAACGACAAGCCTACCGTTGTTGCCCTGCGCGAAATCGCAGAAGGCCTGATGAGCTACGAGTTTATCGCCAACGCTGAAATCGTCGAAGACGAACCGCT GTTTGCAGCGTTCGAGGACGAGTCCAACGAGGCGAACTAAGCCTATGCCCGGTCGACGTAGTACGGCGAAGGGTTCACAGTTTTGGCAGGAGGCTCCCTC
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| DNA Sequence for Gene |
>TU84_RS20665
ATGCCGAGCATAGACGCCCTCGCCGACAGCTTGTCGACCTACCTCAGTGCGGACCAGGTCAATCTGGTCCGACGAGCGTATTTCTACGCAGAACAAGCCC ACGACGGCCAACGCCGACGTAGCGGCGAGCCTTATGTCACGCACCCGCTGGCAGTGGCAAACATCCTTGCCGACATGCATATGGACCATCAAAGCCTGAT GGCGGCCATGCTGCATGACGTGATCGAAGACACCGGTATTGCCAAAGAAGCGCTGGTTGCGCAGTTCGGTGAAACCGTGGCCGAACTGGTCGATGGCGTC AGCAAGCTGACTCAGATGAACTTCGAAACCAAAGCCGAAGCCCAAGCTGAAAACTTCCAGAAAATGGCCATGGCCATGGCCCGCGACATTCGCGTGATTC TGGTCAAGCTGGCGGACCGCTTGCACAACATGCGTACCCTCGAAGTGTTGTCCGGCGAAAAACGCCGGCGGATTGCCAAGGAAACCCTGGAAATCTACGC GCCCATCGCCAACCGGCTGGGCATGCACAACATTCGTATCGAATTCGAAGACCTCGGTTTCAAGGCGATGTACCCGATGCGCTCGGCGCGCATTTATCAG GCGGTCAAGCGCGCCCGGGGTAATCGCAAAGAGATCGTCAACAAGATTGAAGAGTCCCTCAGCCACTGTCTGGCCGTCGACGGCATTCAGGGCGAAGTGA GCGGGCGGCAAAAGCACATCTACGGCATCTATAAAAAGATGCGTGGCAAGCGTCGGGCGTTCAACGAGATCATGGACGTGTACGCGTTCCGCATCATCGT CGACAAAGTGGACACCTGCTACCGCGTGCTGGGCGCTGTACATAATTTGTACAAACCGCTGCCGGGCCGCTTCAAGGACTACATCGCAATCCCTAAAGCC AACGGCTATCAATCGCTGCATACCACGCTGTTTGGCATGCATGGCGTACCGATCGAAATTCAGATCCGTACCCGTGAAATGGAAGAAATGGCCAACAACG GCATCGCCGCGCACTGGCTGTACAAATCCAGTGGCGACGAGCAGCACACCGGGACTCACGCCCGGGCGCGGCAATGGGTCAAGGGCGTGCTCGAGATGCA GCAGCGCGCCGGTAACTCCCTCGAATTTATCGAAAGCGTAAAAATCGACCTGTTCCCGGACGAGGTCTACGTCTTTACGCCCAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCGGTCGACTTTGCCTACGCGGTACACACCGACGTCGGCAACAGCTGCATTGCCTGCCGGATCAACCGTCGTCTTGCGCCGC TGTCCGAGCCACTGCAAAGCGGCTCCACGGTCGAGATCGTCAGTGCACCGGGCGCACGCCCGAACCCGGCCTGGCTCAACTTTGTGGTCACCGGCAAGGC GCGCACGCACATTCGCCACGCGCTTAAATTGCAACGCCGTTCCGAGTCCATCAGCCTCGGCGAGCGTTTGCTGAACAAAGTGCTTAACGGCTTTAACAGC GCGCTGGACAAGATCCCCGCCGAACGCGTTCAGGCCATGCTCCAGGAATATCGCCTGGAACACATCGAAGACCTGCTTGAAGACATCGGCCTGGGCAACC GCATGGCGTATGTCGTGGCCCGACGCCTGCTGGGCGAGGGCGAGCAACTGCCGAGCCCCGAAGGTCCGCTGGCCATTCGCGGCACAGAAGGCCTGGTGCT CAGCTACGCCAAATGCTGTACGCCGATCCCGGGCGACCCGATTGTCGGCCACCTGTCGGCGGGCAAAGGCATGGTCGTGCACCTGGACAACTGCCGCAAT ATCAGTGAAATCCGTCATAACCCTGAAAAATGCGTCCAGCTATCATGGGCCAAGGACGTTACCGGCGAATTCAACGTCGAATTGCGCGTCGAGCTGGAAC ACCAGCGCGGCCTGATCGCCTTGCTGGCCAGCAGCGTCAATGCCGCCGACGGCAACATCGAAAAAATCAGCATGGACGAACGCGATGGTCGAATCAGCGT GGTCCAACTGGTAGTCAGCGTGCACGACCGTGTGCACCTGGCGCGCGTGATCAAAAAACTGCGCGCCCTTACCGGGGTCATCCGCATCACTCGTATGCGT GCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCACCTAATTACAAGGAGTCACCCATGTCCAAGACTGTAATCACCAGCGATAAGGCACCTGCAGCGATCGGTACTTACTCTCAGGCGATCCAAGCTGGCA ATACCGTCTACATGTCCGGTCAAATCCCGCTGGACCCAAAAACCATGGAACTGGTTGAAGGCTTTGAAGCCCAGACCGTTCAGGTGTTCGAAAACCTGAA GTCGGTAGCTGAAGCAGCGGGTGGCTCGTTCAAAGACATCGTCAAGCTGAACATCTTCCTGACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGAACAGCCGTACCCGGCACGCGCAGCCATCGGCGTTGCCGCTCTGCCAAAGGGTTCGCAAGTCGAGATGGACGCCATTCTGGTACTCG AGTAATACCCTCGGCGCAGCACATTCATGCTGCGCCAACCCCCTCGCTTCTCCCCCCGCTTTAAAAGGATTCCACTATGCGCAAAGCGCTAGCCTTGTCA
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADSLSTYLSADQVNLVRRAYFYAEQAHDGQRRRSGEPYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALVAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHNIRIEFEDLGFKAMYPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAVDGIQGEVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQHTGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFNS ALDKIPAERVQAMLQEYRLEHIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCVQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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