Pseudomonas helleri DSM 29165, TU84_RS20140
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 14_141800_43.1611, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGATCCAGCAAATTGCCCCGCCGCGTACCCTCTACGAAGAACCTAAAAACACCTTTGTGGCCAACTTTATTGGCGAAAACAACCGCCTCAGCGGCCGC CTGCACAGCCAGGACGGGGAGCGCTGCGTGGTCGAGTTGAGCCGTGGCGAGAAGGTTCAGGCGCTGGCCGTGAACGTGGGCCGCACGGGCGATCCGGTGA CGCTGTCGATTCGTCCCGAGCGCATCACCCTCAAGGACGCGAGCGAGTCCTGCGCCAACCGTTTCTCGGGGCGTGTCGAAGAATTTATCTATCTGGGCGA CCACGTCCGGGTTCGTCTGGAAGTCTGCGGCAAGACCGATTTCTTTGTGAAACAGCCGATTGCCGAGCTGGACCCCACCCTGGCCGTCGGTGACGTCGTG CCGCTGGGCTGGCAAGTCGAACATGTACGTGCGCTGGACCCTGTATTAGAGGCGAATTGATCGCCCGGCTTCACCCACCCTGCACAGCGGAGAACACACA
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| DNA Sequence for Gene |
>TU84_RS20140
ATGCACAAGACTTTAAAGTTAACGGCTCTGAGCCTCGGCCTGATGTTTGCGGGCAGTGCGCTGGCCGCGACTGACCTGACCGTAGTGTCGTTTGGCGGCG CGAACAAGGCGGCGCAGGTCAAAGCGTTTTACCAGCCGTGGGAAACCAAGGGCGACGGCAAAATCATCGCCGGTGAGTACAACGGTGAAATGGCCAAAAT CAAGGCCATGGTCGACACCAAAAGCATCTCTTGGGACCTGGTAGAAGTTGAGTCGCCAGAACTGGCCCGTGGTTGCGATGAAGACATGTTTGAAGCGTTG GACCCTGCACTGTTCGGCAACCCGGACCAGTACGTCAAAGGCGCAATCCAGACTTGCGGCGCGGGCTTCTTCGTGTGGTCAACGGTACTGGCTTACAACG CCGACAAACTGAAAACTGCTCCGACCAGTTGGGCGGATTTCTGGGACACGCAAAAATTCCCGGGCAAACGCGGTTTGCGTAAAGGTGCCAAATACACCCT CGAATTTGCCTTGATGGCCGACGGCGTGGCGCCGAAAGATGTGTACACCGTGCTGGCGAGCAAGGACGGGCAGAACCGCGCCTTCAAAAAACTCGATGAG CTCAAGCCTTTCATCCAATGGTGGGAAGCGGGCGCTCAGCCGCCGCAGTACCTGGCCTCTGGCGACGTCGTCATGAGCTCGGCGTACAACGGCCGGATCG CTGCGGTACAAAAAGAAAGCAATCTGAAGATCGTCTGGAATGGCGGCATCTATGACTTCGATGCATGGGCCATCCCTAAAGGCCTGAGCAAGGCTAAAGC CGACGTGGCGAAGAAGTTCATGGCTTTCACCTTGCAGCCGCAACAGCAGAGCCTCTACTCGCAAAACATTGCGTACGGCCCGGCGAACAAAGAAGCCATG CCTTTGCTGCCTAAAGACGTGCAGGAAGACATGCCGACCGCCCCGCAAAACATCGTTAACCAGGTGCAAATCGACGTCAGCTTCTGGGCTGATAACGGTG AGCAACTGGAGCAGCGTTTCAACGCCTGGGCTGCCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGTACGCAACTGCGGCGTGGCTGATCTGGCCACGCCGCCATCGTTTAAAGATTTCCGGAGTTCGCCATGGCCATCGCCGTTCCCCTGAACGAGGTCTC CAACACGTCGTTGAAAAAACGCCTAAAGCGTGCCGAACGGGTTAATCGCTGGAAAGCGCAGGCCCTGATCGCACCGTTGGTTATTTTCTTGTTGCTGGTG TTCCTGGTGCCCATCGCGGCCCTGCTCTACAAAAGCGTCGGTAACCCGGAAGTGGTAGAGGGCTTGCCGCGTACGGTGGTGGCCGTGCACAGCTGGGACG GTAAGGGCTTGCCCGCTGAGCCGGTGTACCAGGCGTTGAGTGAAGACTTGGCCGAAGCCCGCAAGAATCAAGTGCTGGGTGATTTGTCCAAGCGTCTGAA CATGGAGTTGGCCGGCTACCGCAGCCTGCTGATGAAAACCGCCAAGGGGCTGCCGTTCAAGGCGCAGCCAGCGTCTTACAAAGACGCGATGGAAGGCCTG
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| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MHKTLKLTALSLGLMFAGSALAATDLTVVSFGGANKAAQVKAFYQPWETKGDGKIIAGEYNGEMAKIKAMVDTKSISWDLVEVESPELARGCDEDMFEAL DPALFGNPDQYVKGAIQTCGAGFFVWSTVLAYNADKLKTAPTSWADFWDTQKFPGKRGLRKGAKYTLEFALMADGVAPKDVYTVLASKDGQNRAFKKLDE LKPFIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKESNLKIVWNGGIYDFDAWAIPKGLSKAKADVAKKFMAFTLQPQQQSLYSQNIAYGPANKEAM PLLPKDVQEDMPTAPQNIVNQVQIDVSFWADNGEQLEQRFNAWAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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