Pseudomonas helleri DSM 29165, TU84_RS18135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 11_219406_31.6025, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGTCAATCTGGCCAACAGCAAGCTGGGCGACCTTGAAAACTTTCGGGGCGAATACCAGGCGCAATGGGTCGAGCGCGGCAGCCAGGGCGTAACCGGCC AATGGCTGCGCAACTATCAATACTTTCTGGGCCAGCTTGAAACCGCGGTGGGCCAGCAACGCCAAAGCCTGCAATGGCATGAAAACAACCTCAACAAAGC CCGCGAATCCTGGCAACAGGCCTACGCCAGGGTTGAAGGGTTGCGCAAACTGGTCCAGCGCTACGCCGACGAAGCGCGCCAGCTTGAAGACAAGCGCGAG CAAAAACTGATGGACGAACTGTCCCAGCGCCTGCCACGCAAAGAAGTCTACTAATCCCGCATGCCCTGTAGGAGCGAGCTTGCCTCGCGATCTTGTTGAT CATTTAAAAGATCGCGAGACAAGCTCGCTCCTACAGCCTGCGCAGGTTTTCAGAGCGTCTATAGTTCAGGTCAATCGATACCTGAACCAGGAGCTACCCC
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| DNA Sequence for Gene |
>TU84_RS18135
ATGGCCGTGACTTCTCACGTTTCAGCCGACGGCAACCAACTGACCATCGCCATCAAGGGGCGGTTTGATTTTGCCAAGCATCAAGACTTTCGTGCTGCTT ACGAAAAAAACGACCCCATACCCGAGTCGATTGTCGTGGACTTGAAAGAGGCCACCTACATCGACAGCTCCGCCCTGGGCATGCTGTTGCTGCTGCGCGA TCACGCCGGTGGCGATGAAGCCGAGATTCAAGTGGTCAACAGCAGCAACGATGTGCGCAAAACCTTCGAGATATCCAATTTCGACCAGTTGTTCGACATC AAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCCGCCCCAGGCTCGCGGCCTGACGATATTGATCGCCGAAGACAGCGCTGCGGACCGGCTGTTGCTGGCCACTATCGTGCAGCGCCTGGGCCATACCGT GTTGCTGGCCAGCAACGGTGCCGAGGCCGTGGAGGTCTTCCGCCAGCAGCGCCCGCATCTGGTGCTGATGGATGGCCTGATGCCGGTGATGGACGGCTTT GAGGCGACGCGCCAGATCAAGGCGCTGGCCGGTGAAGTGCTGGTGCCGATCATCTTCCTGACTTCACTCAATCACGCCGATGCATTGACCCGCACCCTGG AGGCGGGCGGTGATGATGTGTTGCTCAAGCCGTATAACCCGATGCTGCTGGCCGCCAAGATCACTGTCATGGATCGCCTGCGGCGCTTGCAAGACACCGT GTTGCAGCAACGTGACCAGATCGCCCGGCACAATGTGTATTTGCTCAATGAGCAGCGTGTGGCCAAGGCGGTGTTTGACCGGGTGGCCCATGAGGGCTGC
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| Amino Acid Sequence |
>anti-anti-sigma factor
MAVTSHVSADGNQLTIAIKGRFDFAKHQDFRAAYEKNDPIPESIVVDLKEATYIDSSALGMLLLLRDHAGGDEAEIQVVNSSNDVRKTFEISNFDQLFDI K
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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