Pseudomonas sp. DSM 28140, TU87_RS17345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 8_199608_32.6554, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCCGGACACACTCGGGTCGGGGTGCTGCAGGCCGCTGTCGAAGTGTCGGCCTACCGCTTTGCCGGTCAGCCCGTGCGACTGGAGGCGGGGCAGCAAGTC ACGTTCGACCGCGAGGGTGTCGATGCCATTCGCCCTTTATCCGCAGGCTCGACGGCTTGGGTACACGGCATGTTGAGTGTGGACGACTGGCGGCTGGGCG ACTTTGTGGATGAGTTGAGTCGCTATCGTCCGGGGGTTCTGCACTGTGCGGCAGCAGTTCAAGACTTACGCATTTCAGGGGCGTTTCGTATCGATGACAC AGAAACAGTACTGGAGAATCTCAGCAAAACCCTGCCGGTAAAGGTTCGTTTCATGACCCGCTATTGGGCCAGCATCGAACCGGTCTGAGCGCCGATGCAA AAGGTTTGAGTTTTAACCTTGCTGATTTCGATTCTCATCCGTCAATGACATAAGCCACGCTCGTAGCGAGTTTGTGCCATGACAACGCAAGGATCTTCGA
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| DNA Sequence for Gene |
>TU87_RS17345
ATGCTCCCGCTCCCCCTCAGTGCCACTCATAAAATAACCCGCGCTGTGCGCCTGACGGTATTGGGCGCGTCCCTCGCCAGCCTGTCTGCATTGGCGTTGA CTCCGGCTGTGGCGTATGCCCAAAGCCAGGCGGTGTACCAGATAGCCCCCGGCCCGCTGGGCAGCGCCCTGACTCAATTTGGCGTGCAAGCGGGGGTGAC GATTTCGTTCGATACCCAACAGGCGCGTGATCTCACCACGGGCGGGCTTGAAGGTTCCTACAGCATTGAGGAAGGGCTGGACCGCTTGCTGGCCAACAGC GGGCTGCAAGCCGAGCGTCAACGCAATGGAGGCTATGTGTTGGTCGCCAGCCGTATTCAGTCCGCTCTGGAGTTGGGCGCCACCGAGGTTGTGACTAACC AGTTGGGCACGGTGACCGAGGGCACTGGCTCGTACACGCCGGGCTATATCGCCACCGCCACGCGCATGGTGCTCAAGCCCCGCGAGACACCGCAATCGAT CAGTGTCATCACCCGTCAGCACATGGATGACTTCGCGCTCGATAACGTTGATGACGTGATGCGCCATACACCGGGCATCACTGTGTCGGCGTATGACACA GACCGCACCAACTATTACTCGCGCGGTTTTTCGATCAACAACTTCCAGTACGACGGTATTCCCTCGGCGGTGCGCAACGTGGCCTATTCGGCGGGCAATA CGCTGAGTGACATGGCGATCTATGACCGGATCGAGGTGCTCAAGGGGGCGTCGGGGCTGCTCAGCGGCGCCGGTTCGCTGGGCGGCACCATCAACCTGGT GCGTAAAAAACCTACCCGCGAGTTTCATGGCCATATCACTACCGGCGCGGGTTCTTGGGACAACTACCGTACGGAAGCCGATGTCAGCGGCCCGTTGACC GAAAGCGGTCATGTGCGGGGGCGTGCCGTGGCGGCCTATCAGGACCGCCAGTCGTACATCGACCGCTACTCCAACCAGAGTTCGGTGTTCTACGGCATCC TCGAAGCCGACCTCACGCCGGACACGTTGCTGACCGTGGGCGCCGACTATCAGGACAACAAGCCCCAAGGCTCAACCTGGTCGGGGAGCTTTCCGCTGTA CAACTATGCAGGCGAGATCAACAGCGCCAAACGCTCATTCAGCAACGCCACCGACTGGAGCAGTTGGCAGCAATACACCCGCACCGTGTTTGCAACGCTG GAACAGGATCTGGGTGGCGGTTGGGTCGGCAAACTGCAACTGGATCACAAGCTCAATGGCTACGATGCCCAGTTGGGGGCCATCCAGTTCAACCAGCCGG CGATGGACGGCACTGCCACCATCAACGCACAGCGCTACAAAGGCGAAACCACCAGCGATGCGGCCGACATCTATGTCAGCGGCCCCTACAATTTTTTGGG TCGTGAACACGAACTGGTACTGGGCGGCTCGATCAGCAAAGCCAACTGGCAAGGCAAAGGCTATTGGGATGTCACGTTTGGCACGCCCAATCTGGTCGAT TACTTCAACTGGAAGGGCCACCTGGCCAAACCTGATTGGGGCAAAGCGTCGCAAATCAGCGATGACACGGTGCGCCAGACCGGTGTGTACGCCACGACGC GGCTCAATGTCACCGATGAGCTGAACGTCTTTCTGGGCGCCCGGGTCGTCGATTACACCCTGACCGGCACCACCAATACGTATCGTGAGTCGGGACGGGT GATTCCCTACGCGGGCATCACCTATGACCTGACCGATTACCTGACGGCCTATGCCAGCTACACCGATGTGTTCATGCCGCAGGAGTTCTACAACCTGGAT CGCCACAGCAAGATGCTTGACCCGGACCAGGGTGAAAACTATGAAATCGGCCTCAAGAGCGAAATGTTCGACGGTCGCTTGAACGCCAGCCTCGCGTATT TTGAAGTCAAGGAAAGCAATCGCCCTATCCCGGACGATGCCTGGAACAACCTGGTGCCCACCCCGCCCAACTATGCCTTCAAGGGCACGGCCGCGCGCAC CAAGGGCTATGAACTGGAAATATCGGGTGAGCTAAGCCCGGGTTGGAGCGTGCAGGGCGGTTATACGCACAAGGTGGTGCGCGATGATACGGGTAAGAAG ATTTCGACGTTTGAGCCTGAAGACCAGCTCAGTTTCTACACCATTTACAAACTCAAGGGCGCCCTCGACAAAGTTTCTGTGGGCGGTGGCGCACGCTGGC AGAGCACGGCCTGGCAAGAGATGTATAACGGCCCCAAAGACCGCTACGAAGACTTCTCGCAAAAGCCGTACTGGGTAGTTGATTTGATGACCCGTTATCA ATTCACGGAAAACCTGTCGACCACCGTTAACGTCAATAACGTGTTCGACAAGTATTACTACACCAACATCGGCTTCTATAACTCGGCCATTTATGGTGAG CCGCGTAACGTGATGGTGACCACGCGCTGGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCTGCCTGCAAACGCTTGACTGTTCTGCCTGAGCAGTCGGTGCCTGTAAAAAAGGGGTCAAGTCAGTCACGACACATGACCCCTTATCACCTGTCCCCT GAACATCCATCCTTTGTCAGCCTCCGCGGATGTCACGTTTAATTGCGCGAAGCAAAGAGCGCCTCGGCGATCGATCCAATCCGTCTTTTAGTCTGACTGT TTAAGGGACTCCATCATGATTTTGGGCAGAACACTTGAAAGCTGGTGCGCCAGCTATCCACTGATTAGCGATCTGGTCGCCCTGCACGAGACCACCTGGT TCAACCCCGGCCTGGCACCCGCAGCGCAGGCGCTTGGCGATGTAGGGCTGGGTGCTGCGGACGTGGCCGATGCCAGTGCCCGGCTCGCACGGTTTGCTCC CTACCTGTGTCGTGCATTTCCTGAAACCGCGGCCAGCAACGGCATTGTTGAATCGGATGTGGTGCCGGTCGCGCAATTGCAAACCGTGCTCGCAGAGCGC
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| Amino Acid Sequence |
>ligand-gated channel
MLPLPLSATHKITRAVRLTVLGASLASLSALALTPAVAYAQSQAVYQIAPGPLGSALTQFGVQAGVTISFDTQQARDLTTGGLEGSYSIEEGLDRLLANS GLQAERQRNGGYVLVASRIQSALELGATEVVTNQLGTVTEGTGSYTPGYIATATRMVLKPRETPQSISVITRQHMDDFALDNVDDVMRHTPGITVSAYDT DRTNYYSRGFSINNFQYDGIPSAVRNVAYSAGNTLSDMAIYDRIEVLKGASGLLSGAGSLGGTINLVRKKPTREFHGHITTGAGSWDNYRTEADVSGPLT ESGHVRGRAVAAYQDRQSYIDRYSNQSSVFYGILEADLTPDTLLTVGADYQDNKPQGSTWSGSFPLYNYAGEINSAKRSFSNATDWSSWQQYTRTVFATL EQDLGGGWVGKLQLDHKLNGYDAQLGAIQFNQPAMDGTATINAQRYKGETTSDAADIYVSGPYNFLGREHELVLGGSISKANWQGKGYWDVTFGTPNLVD YFNWKGHLAKPDWGKASQISDDTVRQTGVYATTRLNVTDELNVFLGARVVDYTLTGTTNTYRESGRVIPYAGITYDLTDYLTAYASYTDVFMPQEFYNLD RHSKMLDPDQGENYEIGLKSEMFDGRLNASLAYFEVKESNRPIPDDAWNNLVPTPPNYAFKGTAARTKGYELEISGELSPGWSVQGGYTHKVVRDDTGKK ISTFEPEDQLSFYTIYKLKGALDKVSVGGGARWQSTAWQEMYNGPKDRYEDFSQKPYWVVDLMTRYQFTENLSTTVNVNNVFDKYYYTNIGFYNSAIYGE PRNVMVTTRWDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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