Pseudomonas sp. DSM 28140, TU87_RS17140
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 8_199608_32.6554, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGGCGGTTTCGGAGCAGATCACGCTGTGAAAGCTCTGGCACAGTGATGACAGGGCCAGCGAGTTGGCGGCAGTGCCATTGAACGCGAAGTACACCTCG CAGTCGGTTTCGAACAGTTTGCGAAAGTCATCTGCTGCGCGCAGCGTCCATTCGTCATCGCCGTAAGAGCGTTGGTGGCCGTGGTTGGCTTTTTCCATGG CAGACCAGACTTCGGGGCAGATACCGGAGTAGTTGTCGCTGGCGAATTGTTGGCTCTTGTCAGTCATTTCCCGGTTCCATGGTCGAAGATTGTCGTGCAC TTTAGCCAAGAAATCCGCGAGTGCACAGTTGTGGGTTAAAACCCGGAAATACCTTACAAGGAACTGTTTGAGGGTGTATGTCGTAAATGCACCCTTGCGT GGCGTCCTTGGGCATTTGGTCACCCCGCGCCCGCTCTACCATCGGTCTTAAAGGGCAAGCCCTCACCGACCATGGCGCGCGGGCGCCGGGAGTACAGCCT
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| DNA Sequence for Gene |
>TU87_RS17140
ATGCAACGCTATTCAGGCTTCGGCCTGTTCAAACACTCCCTCAGCCACCACGAAAACTGGCAAAAGATGTGGCGCACGCCCACGCCGAAAAAGGTCTACG ACGTGGTGATTGTCGGTGGCGGCGGGCATGGTTTGGCCACGGCGTATTACCTGGCCAAAGTCCACGGCATCAGCAACGTGGCGGTGGTTGAAAAAGGCTG GTTGGGCGGTGGCAACACCGCACGCAACACCACCATCGTGCGCTCCAACTATTTGTGGGACGAGTCGGCGCACTTGTACGAACACGCGATGAAGCTGTGG GAAGGCTTGTCTCAAGACCTCAACTACAACGTCATGTTCTCCCAGCGCGGCGTTTACAACCTGTGCCACACCCTGCAAGACATGCGCGACTCAGAGCGAC GTGTCAGCGCCAATCGCCTGAACGGCGTGGACGGCGAATTGCTCAACGCGCAACAAGTGGCAGACGAAATCCCCTACCTCGACTGCTCTAAAAACACCCG TTACCCGGTGATGGGCGCCACCGTGCAGCGGCGTGGCGGTGTGGCCCGCCATGATGCGGTGGCCTGGGGCTTTGCCAGGGCGGCCGATGCGCTGGGTGTG GACTTGATCCAGCAAACCGAAGTGCTGGGCTTTCGCAAGGAAAACGGCGTGTGCATCGGTGTCGAGACCAGCAAGGGCTTTATTGGCGCCAAACGCGTGG GCGTGGTCACCGCCGGTAACTCCGGGCACATGGCGCGCCAGGCAGGCTTTCGCTTGCCGATTGAGTCGCACCCGCTGCAAGCGCTGGTGTCCGAGCCGAT CAAACCGATTATCGACAGCGTGATCATGTCCAACGCGGTGCATGGCTACATCAGCCAGTCCGACAAGGGCGACTTGGTGATCGGTGCGGGCATCGATGGC TGGGTCGGTTATGGCCAGCGCGGCTCGTACCCGGTAATCGAGCACACGATTCAGGCGATTGTAGAGATGTTCCCCGTGTTGTCCCGTGTGCGCATGAACC GTCAATGGGGCGGCATCGTCGACACCACCCCCGACGCCTGCCCGATCATCTCCAAAACGCCGCTGCCTAACGTGTTCTTCAATTGCGGCTGGGGGACGGG CGGGTTCAAGGCCACGCCTGGCTCGGGCCATGTGTTTGCGGCCAGTTTGGCCACCGGTGAAATGCACCCGCTGGCGGTGCCGTTCTCCCTCGAACGTTTC CACAACGGCGCGTTGATCGACGAACACGGCGCCGCCGCGGTCGCTCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGAGAAATACCGATGCTGCATATCTTCTGTCCTCATTGCGGCGAACTGCGCTCGGAAGAGGAGTTTCACGCGGCCGGTCAGGCGCACATTCCACGCCC GCTTGACCCTGATGCCTGCACCGACGCGCAGTGGGGCGATTACCTGTTCTTTCGTGACAACCCCCGCGGGCTGCACCACGAGCTGTGGAACCACGTGGCC GGTTGCCGTCAGTTTTTCAACGCCACGCGCAATACCGTGACCTACGAAATACTTGAAACCTACCCCATTGGTACGGCGCCGCAATTCAGTGAACAGCGGC CTCCGGCGACCGCGACTGCTACCAGCGCGCAGGGAGAAAAGGTATGAGCCAGACCCATCGCCTGGCCAATGGCGGCCGTGTGGATCGCAGCAAAGTGCTG ACCTTTACCTTCAACGGCCAACCCTACTCAGGTTACGAAGGCGACAGCCTGGCCGCTGCCCTGTTGGCCAACGGTGTCGACATCATTGGGCGCAGCTTCA
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| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHHENWQKMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKVHGISNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDMRDSERRVSANRLNGVDGELLNAQQVADEIPYLDCSKNTRYPVMGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVLGFRKENGVCIGVETSKGFIGAKRVGVVTAGNSGHMARQAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG WVGYGQRGSYPVIEHTIQAIVEMFPVLSRVRMNRQWGGIVDTTPDACPIISKTPLPNVFFNCGWGTGGFKATPGSGHVFAASLATGEMHPLAVPFSLERF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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