Pseudomonas sp. DSM 28140, TU87_RS15675
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 402 | 422 | - |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 518 | 673 | 1.2E-45 |
| Coils | Coil | Coil | - | - | 6 | 26 | - |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 519 | 676 | 2.76942E-64 |
| Coils | Coil | Coil | - | - | 490 | 517 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 523 | 676 | 8.63E-49 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 516 | 676 | 6.2E-50 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 249 | 675 | 2.9E-70 |
| Coils | Coil | Coil | - | - | 465 | 485 | - |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 504 | 677 | 9.4E-57 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 512 | 677 | 8.3E-51 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 507 | 678 | 8.8E-60 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.