Pseudomonas sp. DSM 28140, TU87_RS15605
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 7_255600_33.9873, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTTGGCCCGCGACGGTGCTCGAGATGCGGTGTTTAACGTCTACGAGTCATTGTTTATCGACCCCCCCAAAGACCCGACGGTGCAGGTCACGCTGCTGA GTGATCCGCACATCAAGGTCAACGGCAAGATCCGCGAAATCACCCCAACGGTGGCAGCGCAAAGCGGCACACTGCAAATCAAAGTGCAACTGGAGGCGCT GCCCAAGGGCATGGATCTGGGCGCTATCGTGAGCGTTAACCTCACACCGGCCGCCAGCCGCAGCATCGAACTGCCCTGGTCGGCACTGACCAAAGACGTC AGTGAGCCTGCCGTCTGGCTGGTTGACGACAAAAACAGCGTGCACCTGAAGCGGGTCAAGGTCGGGCGTTATCTGACCGGTAGCGTGATCATCAGTGAAG GCCTCAAGGACGGAGAGAACGTGGTGGTCGCAGGCGGGCAACTGCTAAACCCAGGCATGCGGGTCGAAATTGCCCCCACGCCTGAGGGGGGCGCCCAACT
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| DNA Sequence for Gene |
>TU87_RS15605
ATGAAGTGTTTGTGGATAGTGCCGTTCGCTGCCGCACTGCTGGTCGGCTGCTCTGAAGATCTCCCCCCCCAAGCGGTACGCCCCGCCTTATACGTTGTAG TGCAGCCCGAACGGTCAGAGCACCTTGGGCGTTTTGCCGGCAATATCGAAGCCCGCTACGAGAGCACCTTGGGCTTCCGCGTACCGGGGCGCATCGTGCG CCGCTTCTACGACGTGGGCGCAGTGGTTAAACAGGGGGACATCCTGGCTAATCTGGACCCGACCGATCAGCAAAACCAATTGCGCGCAGCCCAAGGCGAC TTGGCCAAAGTGCAGGCACAGTTGATCAACGCACAGGCTAACGCCCGCCGCCAGCAAGAACTGTTCGACCGGGGTGTCGGCGCGCAAGCACAACTGGACA CCGCTCAGGCTGACCTCAAAACCACTGCTGCCTCGATGCAGCAGGCCGTCGCTGCGGTGAATCAGGCGCAAGACCAACTCAGTTACTGCAACCTGCGCGC CGACCATGACGCGGTCATTACCGACTGGAAAGCCGAAGCAGGCCAAGTGGTCAGCATCGGCGAAGAGGTGGTGACTCTGGCGCGGCCCGAAATCAAGGAA GCGGTGATCGATCTTCCCGGTCCTTTGGCCGAGGCGCTGCCCAAAGGCATTGAATTTCAGGTCGCGGGGCAGCTTGATCCCAATGTCAAAACCACTGCTC ACGTGCGTGAAATCGCCCCGCAAGCCGACAGTGCCACCCGTACCCGTCGTACACGGCTGACACTGGACCAAACCCCTCCCGCGTTTCGTTTGGGCAGCTC CGTGAGCGTGACCGTGAGCACCCCGATTGTCGAGCACTTCGAGTTGCCCGTCACCGCGTTACAGGACGTCGATGGCAAAACCCGCGTGTGGGTCATTGAC ACGCAGACGCAAAGCGTCAGCCCGCAGGATGTGACCGTGCTCAGTCGCGATACCCAGAATGCACTGCTGACCGGTGGTCTCAAACCAGGCGACAAAGTCG TCATTGCCGGCGTGAACAGCCTCACCCCCGGGCAGAAAGTCAGACTCGATAAGGAAAGCTCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGGAAGTTCAACCTGTCTGAGTGGGCCCTGAAGCATCAGTCGTTTGTCTGGTATTTGATGTTTGTGTCTGTGCTCGCCGGGATTTTTTCGTACATGAA CCTGGGGCGTGCCGAAGACCCGAGTTTCGCGATCAAAACCATGGTGATCCAGACGCGTTGGCCGGGTGCCACGGTCGATGAAACCCGGCTTCAGGTCACC GACCGCATCGAGAAAAAACTCGAAGAGCTCGACTCGCTCGACTACGTGCAAAGCTACACCCGCCCAGGCGAGTCCACGGTGTTCGTGTTCCTCAAGGACA CCACAAACGCCAAGGCCATCCCGCAGATCTGGTATCAGGTTCGCAAGAAGATCGATGACATTCGTGGCGATTTCCCTCAGGGCATTCAAGGCCCGGGATT CGACGATGAATTCGGAGACGTGTACGGCACAATCTATGCCTTCACCGGCGACGGCTTTACCATGCGCCAATTGCGCGATTACGTGGAACACGTGCGCACC
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| Amino Acid Sequence |
>RND transporter
MKCLWIVPFAAALLVGCSEDLPPQAVRPALYVVVQPERSEHLGRFAGNIEARYESTLGFRVPGRIVRRFYDVGAVVKQGDILANLDPTDQQNQLRAAQGD LAKVQAQLINAQANARRQQELFDRGVGAQAQLDTAQADLKTTAASMQQAVAAVNQAQDQLSYCNLRADHDAVITDWKAEAGQVVSIGEEVVTLARPEIKE AVIDLPGPLAEALPKGIEFQVAGQLDPNVKTTAHVREIAPQADSATRTRRTRLTLDQTPPAFRLGSSVSVTVSTPIVEHFELPVTALQDVDGKTRVWVID TQTQSVSPQDVTVLSRDTQNALLTGGLKPGDKVVIAGVNSLTPGQKVRLDKESSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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