Pseudomonas sp. DSM 28140, TU87_RS12975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 5_424213_33.0956, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCAGGAATAAGGGTTCGCTGTGCGCCTGCGTTTGATCGCTGTCGGTTCGCGTATGCCCAAGTGGGTGGAAGAAGGCTGGCATGAATATGCCAAGCGTCT GCCATCCGAACTGGCGCTCGAACTGGTAGAAATACCGCTCAATACCCGTGGCAAGAATGCCGACGTGGCCCGTTTTATCCGTCAGGAAGGCGAGGCCATG CTGGCCAAAGTCGGCCCGGGCGAGCGGATTGTCACGCTGGAAGTGCACGGTAAGCCCTGGAGTACCGAGCAACTGGCGGTCGAACTCGACCGCTGGCGCC TGGACTCGCGCACGGTCAACTTCATGGTGGGCGGGCCTGAAGGGCTGGCACCCGAAGTGTGCGCGCGTGCCGATCAACGCTGGTCGTTGTCGCCGTTGAC GTTGCCACACCCGTTGGTAAGGATTCTGATTGGTGAGCAGTTGTATCGCGCCTGGACGGTTCTGTCCGGGCACCCTTATCACAAATAGTCAGCGTCCTGA
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| DNA Sequence for Gene |
>TU87_RS12975
ATGTCTCAGCCGATTCGCCTCAAAGACCACGAGAAAGACGCACGCCTTGTGCGCAGCCGCGTCGTGGTCGGCGCCTGTGTCGTGGTGGCGCTCATTTGTG CGCTGATCGTGCGCCTGTACTACTTGCAAGTGGTGCAGTACGAGTACCACTCGACATTGTCGGAAAACAACCGGGTGCACGTGCAGCCGATTCCCCCCAC CCGTGGCCTGATTTTTGACCGCAATGGGGTGGTGATCGCCGACAACCGGCCGAGCTTCAGCCTGAGCATGACCCGCGAGCGCTCCGGTGACTGGCAACAA GTGCTCGACGTGATTGTTGAGGTGTTGCAACTCACCCCGCAAGACCGCGCACTCTTTGAAAAGCGCATGAAACAGGGGCGTCGGCCGTTTGAGCCGGTGC CCATTCTGTTTGAGCTGAACGAAGAGCAGATCGCCCGCATTGCCGTTAACCAGTTCCGCCTGCCAGGGGTGGAAGTGGTTGCGCAGTTGGTGCGCCACTA CCCGCAAGGCGCGCACTTTGCGCACTCGGTGGGGTACATGGGGCGGATCAACGAAAAAGAGCTTAAAACCCTCGACCCGGTCAATTACAGCGGCACCCAT CACATCGGTAAAACCGGCATCGAGCGCTTCTATGAAGCCGAGCTGCACGGGCAGGTGGGTTACGAAGAAGTTGAAACCAACGCCCGTGGCCGGGTGTTGC GCGTGCTTAAACGCACCGACCCGATCCCCGGCAAAGACATCGTGCTCAGCCTCGATATCAAGTTGCAGGAAGCCGCCGAGGAGGCGCTGGCCGGGCGCCG TGGCGCAGTTGTCGCCCTGAACCCGATGACGGGCGAGGTGCTGGCAATGGTCAGTCAACCCAGTTTTGACCCCAACCTGTTTGTGACCGGCATCAGCTTC AAGGCTTACGCCGAGTTACGCGACTCCATTGATCGCCCGCTGTTTAACCGGATTTTGCGCGGCCTGTACCCGCCGGGTTCGACCATCAAGCCTGCGGTGG CGATTGCCGGCCTCGACAGCGGCGTGATCACCGGTGCCTCGCGGGTCTACGACCCCGGTTATTACCAGTTGCCCAATTACGATCACAAATACCGTAACTG GAACCGCAGCGGTGATGGCTATGTGGATTTGGACACGGCGATCATGCGTTCCAATGACACCTACTTCTACGACCTGGCCCACAAGCTGGGCATTGACCGG CTGTCGACCTACATGAACCAGTTCGGCATTGGTCAGAAAGTCTCCCTCGACATGTTTGAAGAGTCGGCGGGGCTGATGCCGTCGCGCGAGTGGAAGCGCG CCACCCGACGTCAGGCCTGGTTTCCGGGCGAAACCCTGATTTTGGGGATCGGTCAGGGCTACATGCAGTCCACGCCTTTGCAACTGGCGCAAGCCACGGC GCTGATTGCCAGCAAGGGCAAGTGGATTCGCCCGCATCTGGCCAAGACCATTGAAGGCGTACCGCCCGTGGACCCGAATCCGATGCCTGATATCGTGCTG CGCGACCCGTCCAACTGGGCCAAGGTCAGCCACGGCATGCAGCAAGTGGTGCATGGCGCACGCGGTACGGCACGGGTCGCCGGGGTTGGCGCGCAATACC TGATTGCCGGCAAAAGTGGTACGGCGCAGGTGGTGGCCATCAAGCAAGGCGAAAAATATGACCGCTCCAAGGTTCAGGAACGCCACCGCGACCACGCCTT GTTCGTCGGTTTTGCGCCGGCCAATAACCCGCAAATTACGGTCTCGGTGATGATTGAAAACGGCGAGGCGGGCAGCCGCGTCGCCTCGCCAGTGGTGCGC AAGGTCATGGATGCCTGGTTACTGGATGCAGACGGCAAGCTCAAACCTGAGTACGCCAGCCCTTCAAAGGCGGAGGTTTCGGCCAGTGATGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTTGATCGCATGCTCTCCAGTGAGGATGTGATGCGTCGGCGTGCCTCGCTGCTTCAGCGCTTGCACATTGATGGCCCGCTGCTGATTTTGCTGCTGACC CTGGCAGCAGGCAGTTTGTTTGTGTTGTATTCGGCCAGCGGTAAAAGCTGGGACCTGCTGAGCAAGCAGGCGACCTCGTTCGGTATCGGTCTGGTGTCGA TGTTTATCATTGCCCAGCTTGAACCCCGCTTTATGGCGCGCTGGGTGCCCATCGGCTACCTGGTCGGTGTGTTGTTGCTGGTGGTGGTGGACGTGATGGG CCACAACGCGATGGGCGCCACGCGCTGGATCAACATACCGGGGGTGATTCGTTTCCAGCCTTCGGAGTTCATGAAGATTTTGATGCCGGCGACCATCGCC TGGTATCTCTCCAAGCGCACCTTGCCCCCGCAGCTCAAGCACGTCGCTATCAGTTTGATGCTGATCGGCGTGCCGTTTGCGCTGATTGTGCGCCAGCCCG
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| Amino Acid Sequence |
>penicillin-binding protein 2
MSQPIRLKDHEKDARLVRSRVVVGACVVVALICALIVRLYYLQVVQYEYHSTLSENNRVHVQPIPPTRGLIFDRNGVVIADNRPSFSLSMTRERSGDWQQ VLDVIVEVLQLTPQDRALFEKRMKQGRRPFEPVPILFELNEEQIARIAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYMGRINEKELKTLDPVNYSGTH HIGKTGIERFYEAELHGQVGYEEVETNARGRVLRVLKRTDPIPGKDIVLSLDIKLQEAAEEALAGRRGAVVALNPMTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRILRGLYPPGSTIKPAVAIAGLDSGVITGASRVYDPGYYQLPNYDHKYRNWNRSGDGYVDLDTAIMRSNDTYFYDLAHKLGIDR LSTYMNQFGIGQKVSLDMFEESAGLMPSREWKRATRRQAWFPGETLILGIGQGYMQSTPLQLAQATALIASKGKWIRPHLAKTIEGVPPVDPNPMPDIVL RDPSNWAKVSHGMQQVVHGARGTARVAGVGAQYLIAGKSGTAQVVAIKQGEKYDRSKVQERHRDHALFVGFAPANNPQITVSVMIENGEAGSRVASPVVR KVMDAWLLDADGKLKPEYASPSKAEVSASDE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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