Pseudomonas sp. DSM 28140, TU87_RS12700
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 5_424213_33.0956, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGGATGGCGGGAGTTCAGGCATCGACAAAGCCGTGCCCCATGAAGACGATGGGCATTACGGCTGGGCCAGCCGTAAGGAAAGACTACGATAAGTCTCA GGTAAATCATTCATCCAACACTTCCTTGATTCCTTACTTAGTGCTGGCTCCAAGGCTGGGGGGCTAAACTAATTTTATCCATGCGCTTATAGCTGGTCGA GCACCGCGCATCCGCACCTCTCACGTGCGAATTAGAGATTTCTGGTCGCTAAGTGAGCACGGTGTAGCAACTAGCATTGTAAAAACTGAGAACCGTAAAC GGTTGATCGCACGGTACGCGCGTCAACATTTCAAGAAAGCCGCCGAATATTACAAAATTGTAATTTCTCAGACATGCCCCCGTTATCTACAGATTGCAAC GATACAACTCGGCGATGATACAGGAGGCGCGACCAGCTTCCTTCAAACAACAATTCCAGCCGAAGAGCTTTCTAGTTCTGCCGAACCGAAGGAGTGATTA
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| DNA Sequence for Gene |
>TU87_RS12700
ATGATTAACAATACAAAATTTTCGATAGCCGCTATGGCAATGGTTGTCAGCTCTGTGCCGTCCATGGTGAATGCGGAAGAAAAAAACGGCGGCTTTATAG AGGATAGTAGTCTTACCGTTCTTAACCGCAACTACTACTTCAATCGCGAACATCGTAACGGTGAGTCAAGCCCTACAGGCAATGGATATTCCGAAGCATG GGCAAACGCTATTATTACTAAATTCGAGTCTGGATTTACCCAGGGCACAATCGGTGTCGGAGTGGATGCGTTTGCTATGATTGGAATAAAACTCGACACG GGTGGCGGCCGTAATGGCGGCCGTAGTTCATTTGATGTCCTTCCAGTAAATAGCAACGGAGAGGCAAGGGACGAATATACAAAAGTGGGAGGTGCGGCAA AAATTCGCGCCTTTGACACCGTAGTAAAAGTCGGCGACGTATTCCCATCCACCCCAGTTGTGGCTGCTGGCGACTCAAGACTACTACCGGAAAGTTTCAC TGGTGTCACAGCAACAAATACTAGCATTGAAGGCTTGACCGTTCAGGGCGGTCGCCTACATGCCATGAGCCAGCCAGTTTCGAGCAACATGCGCGACAAC TTTGCGACCTTCTATGCCGGGCCTGTTAACTCGCCTTGGGTAGGCTACTTTGGTGGTGATTATAACTTAAACAAAAACGTCACCCTTAGTCTTTATTCCA GTCGCCTCAAGGACGCTTGGAATCAATACTATGCTGGCACCGGGCTAAACTACTCATTGTCAAATGAGCTTTCCGTATTCGGAGGCCTTAACTATTATAA AGCAGTCGACGAAGGGAAAAAATTACTTGGCGATTTCGACAATAACATATGGAGCGGGAAAATAGGCGTGAAGTATGGCGCACACACACTTGCACTATCC CATCAGCGAAATAATGGCAATAATGACTTCGATTACCTGCGTCAGTCGGACTCGATCTTTCTTGATAACTCAATTCAGTACAGTGATTTTAACTCACCTA AAGAACGCTCTTGGATGGTTCGCTACGACCTCGACATGACATCGTATGGTGTGCCTGGCTTGTCGTTTATGACGCGTTACGGTCGTGGCACTGATGCTGA TTACTCTAACGCTAATACGACGTACATGAGACGCGATGCGGATGGAAACCCACTTACCGACCAGAAACGTTGGGAGCGTGACATCGAAGTAAAATATGTC GTTCAGACAGGCACCTTGAAAGATATGTCTTTGCGCCTACGGCAAGCTAATACTCGTGCAACCACATTTGAGTCGGATCTGGATGAGGTTCGTGTGATTA TTGAGTATCCATTAGCTATTCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCTGCGCAGGATGAATCATCCTAGACGAACATTACGTTTTTGCTGAAAAATTTCAAAAATGTAATTTTTCAATCATCTTCCTGTTAGCTTAAGTAACT TATAGTAAACTGGAGTTTATAGCAATCTGCTAGCGCATCTGGCCAGATTGCTACAGGTAAGTAACACCCTTGCAAAAACCTGAAGCTCACTGCTGTCAAG TTGAAGCTCCGCATCCACTTTTAGATTACTCATCTAAATACGATGTATTTTAAGACGCCCTTCGGGGCGTCTTTTTTATGCCTGCCGTAAACACCCCCCC ACATTTTATGTCTTATGACGCACGTCAAAAAGATGAGCCCCTATGCCAAGAGCGTAGAGGCTAACCACCTTTACGGCATGTTCCGGCCACTGTGTATCTG ACTGTATTCAGTACTCCTTCAGAGTCTTCGTATGTCATAGCTGCGGGCATCACCCCGCACCCTTCCGCTGGTCGCACCATGCTAACTACATTCACAACAT
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| Amino Acid Sequence |
>porin
MINNTKFSIAAMAMVVSSVPSMVNAEEKNGGFIEDSSLTVLNRNYYFNREHRNGESSPTGNGYSEAWANAIITKFESGFTQGTIGVGVDAFAMIGIKLDT GGGRNGGRSSFDVLPVNSNGEARDEYTKVGGAAKIRAFDTVVKVGDVFPSTPVVAAGDSRLLPESFTGVTATNTSIEGLTVQGGRLHAMSQPVSSNMRDN FATFYAGPVNSPWVGYFGGDYNLNKNVTLSLYSSRLKDAWNQYYAGTGLNYSLSNELSVFGGLNYYKAVDEGKKLLGDFDNNIWSGKIGVKYGAHTLALS HQRNNGNNDFDYLRQSDSIFLDNSIQYSDFNSPKERSWMVRYDLDMTSYGVPGLSFMTRYGRGTDADYSNANTTYMRRDADGNPLTDQKRWERDIEVKYV VQTGTLKDMSLRLRQANTRATTFESDLDEVRVIIEYPLAIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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