Pseudomonas sp. DSM 28140, TU87_RS11960

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:cd06261	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0055085	transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:cd06261	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF12911	N-terminal TM domain of oligopeptide transport permease C	IPR025966	Oligopeptide transport permease C-like, N-terminal domain	19	71	3.5E-14
Pfam	PF00528	Binding-protein-dependent transport system inner membrane component	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	118	301	2.9E-29
CDD	cd06261	TM_PBP2	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	101	282	2.42675E-20
SUPERFAMILY	SSF161098	MetI-like	IPR035906	MetI-like superfamily	95	282	1.7E-28
Gene3D	G3DSA:1.10.3720.10	-	IPR035906	MetI-like superfamily	90	297	1.9E-22
PANTHER	PTHR43386	OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC	-	-	23	300	2.4E-89

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.