Pseudomonas sp. DSM 28140, TU87_RS11955
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 5_424213_33.0956, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGCAATCAGACCTGGCGAAGATCGGCCTCAAACTGGACATTCGGGTCATGGAATGGGGTGAGATGCTCAAGCGCGCCAAAAATGGCGAACATGATCT GGTGTCCACCGGCTGGGGCGGCGACAACGGCGACCCGGACAACTTCCTAACCCCGCTGCTCAGCTGCGATGCCGCCAAAAATGGTGAAAACTACGCGCGC TGGTGCAACAAAGACTTCGAGGCGCTGATCACCAAAGCCCGTAACATCACTGAACCCGCAGAAAGAGCGGCACTCTATGAACAGGCACAGGTGCTCTTCA ACCAGGACCAACCCTGGATCAACGTCGTACACCCCATGCTCTTTACTGCCAGACGCAGCAACGTCGAGGGCTACATCCTTAGCCCGCTGACCAATAACAA CTTTGCCACCACCCAGGTGAAGTAGAACAATAAAACACCCGCCAGCGTTCACCCGAACCCTGGCGGTCCTGCCTAACCGGCTGATGAGGTACACCACACG
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| DNA Sequence for Gene |
>TU87_RS11955
ATGTTTAGTTTTATTGCCCGCCGAATAGGGCTATTGATCCCTACGTTCTTCGGCATCACCTTGCTGACCTTCGCCCTGATCCGCATGATCCCCGGCGACC CGGTCGAAGTCATGATGGGTGAACGTCGGGTCGATCCAGAGATGCATGCACAGGCCATGGAGCGTTTGGGCCTGAACAAGCCACTCTACGAACAGTATTT CGACTACGTGACCAAACTCGCCCATGGCGATTTGGGCGAATCGTTGAGAACCCGTGAAAGCGTGTGGACCGAATTTTCTGCGCTGTTCCCCGCCACCCTG GAACTGTCGATGGCCGCCCTGTTGTTTGCAGGCATTCTCGGACTGCTGGCCGGGGTCATCGCCGCTTTGAAGCGAGGCTCACTGTTTGACCACGGGGTGA TGGGCATCTCCCTGGCGGGTTACTCCATGCCGATTTTCTGGTGGGGGTTGATTCTCATCATGTTCTTCTCGGTGAGCCTGGGCTGGACCCCCGTGTCAGG ACGCATCGACCTGCTGTATGACATCGAGCCCAAGACCGGCTTCATGCTCATCGACACCCTGCTCAGCGACGAACCCGAAGCCTTCTGGGACGCGCTGCAC CACATGATCCTGCCTGCGATTGTGCTCGGCACCATCCCGCTGGCAGTGATTGCGCGCATGACCCGCTCTTCGATGCTCGAAGTGCTGCGCGAAGATTACA TTCGCACCGCCCGCGCCAAAGGCCTGTCGCCCGCACGCGTGGTGTTTGTGCACGGCCTGCGCAATGCACTGATCCCGGTGCTTACCGTGGTCGGCCTGCA AGTCGGCACCCTGCTGGCCGGCGCCGTACTGACCGAAACCATCTTCTCGTGGCCCGGCATCGGTAAATGGCTGATCGAAGCCATTGGCGCCCGCGACTAT CCCGTGGTGCAAAACGGCATCCTGTTAATCGCCTGCCTGGTGATTCTGGTCAACTTCGTGGTGGACATCCTCTACGGCTTTGCCAACCCACGCATCCGCC ACCAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCCTGACCATGACTACCACACCTACACCCGCGACTGCGGTGGATCAAAGCCTGCTTTATCCCTCGCCTTACAAAGAATTCTGGCACGCGTTTTCACGC AACAAGGGCGCCGTGGCCGGGCTGATTTTCATGAGCATCATCGTGTTCTGCGCGCTGTTTGCGCCGTGGGTTGCCCCGCACAACCCCAGCGAGCAATACC GGGACTTCCTGCTGACGCCACCGGCGTGGCTTGAAGGCGGGCAGATGCAGTTTTTGCTCGGCACTGACGAGCTGGGCCGTGACCTGCTGTCCCGACTGAT CGAAGGCTCGCGCCTGTCCTTGCTGATCGGCTTGTCATCGGTGGTGATCTCGCTGATTCCGGGCGTGATCCTGGGCCTGTTTGCCGGGTTTTTCCCGCGC TTCCTCGGCCCCGGCATCATGCGCTTGATGGACATCATGCTGGCCCTGCCCTCCTTGCTGCTGGCGGTGGCAATTGTCGCCATCCTCGGCCCTGGCCTGA
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| Amino Acid Sequence |
>peptide ABC transporter permease
MFSFIARRIGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYEQYFDYVTKLAHGDLGESLRTRESVWTEFSALFPATL ELSMAALLFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTGFMLIDTLLSDEPEAFWDALH HMILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAKGLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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