Pseudomonas sp. DSM 28140, TU87_RS11540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 5_424213_33.0956, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCGGTCTGATCTGGATGGCGATCATGATGTATCAGGTCCAGAAAAATGGCCTGACAGCGACCAACAAAACCCGTCTGAGCTGCCTGAGCTTGTTCTGG CACTTCCTGGACGTGGTGTGGATCTGCGTATTCACCGTTGTTTACCTGATGGGGACTCTGTAAATGGCTAACGCACATTCTGACGGCGCGAACCACGGCA GCGTGAAGTCCTACGTAATCGGCTTCATCCTGTCGGTCATCCTGACCGTCATTCCGTTCGGGCTGGTGATGTACCCATCGCTGCCTAAAATGACCACCCT GGCGATCGTGCTGTTGTTCGCTGTGGTTCAAGTGATTGTTCACCTGGTGTATTTCCTGCACCTGGACCGTTCGCCTGCACAACGCAATAACGTCACAGCG CTGGTGTTCGCAGCCCTGGTTATTGTGCTGCTGGTGGGCTTGTCCCTGTGGATCATGTTCAGCATCCACACTGAAATGATGGCGAAGTGAGGTAAGCCCG
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| DNA Sequence for Gene |
>TU87_RS11540
ATGTCCTTTAAGCACTTTATCCAAATCACCAAACCGGGGATCATTTTCGGTAACGTGCTTTCTGTGGCAGGCGGGTTCTTCCTGGCCTCGAAGGGGCATT TTGATCTTGCCCTGTTCCTGGCTGCGGTGATCGGCACCTCCTTGGTGGTTGCGTCGGGTTGTGTGTTCAACAACTGCATCGACCGCGACATAGACATCAA GATGGACCGCACCAAGAACCGCGTGCTGGTGCAAGGCCTTATCTCCCTCAAGGTGGCGTTGGTTTACGCCACCTTGCTGGGGGTTGCAGGCTTAGTGCTG CTGTATCGCGTGGCCAACCCGCTGGCAGCATTGTTTGCCGCGATCGGCTTCGTGATCTACGTCGGTCTGTACAGCCTGTACTTCAAGCGCAAGTCGGTTC ACGGCACGCTGATTGGCAGTCTGTCGGGTGCAATGCCGCCTGTGATCGGCTACGTGGCTGTGAGCAACAGCTTCGATCTGGCCGCACTGACTTTGCTGGT GATGTTCAGCCTGTGGCAGATGCCGCATTCCTACGCCATCGCGATCTTCCGCTTCAACGACTACCTGGCCGCATCGATTCCGGTGTTGCCTGTTAAGCGC GGGATCAAAGTGGCCAAGAAGCACATCCTGCTCTACATCCTCGCGTTCCTGATCGCGACCCTGATGCTCACCCTCGGCGGTTACGCCGGTATGAGCTACA TGGCCGTGGCGGCTGCGATGGGCATGTACTGGCTGTACATGGCGTGGACCGGTTACAAAGCGGTCGACGACAAGGTTTGGGCACGCAAGCTGTTCGTGTT CTCGATCTTCACCATCACCGCGCTGAGCGTCATGATGTCTCTGGACTTCAAAGTGCCGACTGAGTTGTTACTGACTTACGCGCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGCCTCAGGACAAAAGATCCCCGCCCTTCGAAAGAAGCGCGGGGATTTTTTTTAGTCGAGGTGGGCGACGGTCTTGCAGGCAGGCTTGCTGAGGGGCCT GCATGCCTTCACTGGCGTTGATCCGGTCGGTGTGCACTTTCAGCGCTTCGGGGGCCATGTCCTTGAAGTACCCATAGCCTATGCCGCCTTCACCCGCGCA ATGCCGTGGCGCTTGAGGGTCCCCTTTTGTGCTGCCATGCAGCGCTGTCCTGCGGGAAAGCGCTGCACGGTGTCGGTTCCAACAGGCAGGGGTGTTAGAG GCTAAAACGCGCCACCATCGCATTCAGGTCGATGGCCAGACGCGCCAAGTCATTGCTGGCAAGGCTGGTCTGGCTGGCGCCACTGGCCGATTGCACAGAC AGGTCGTTGATGTTGATCAAGTTGCGATCCACTTCGCGGGCCACTTGTGCCTGTTCTTCAGCCGCGCTGGCGATCACCAGATTGCGCTCGTTGATTTCGA
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| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MSFKHFIQITKPGIIFGNVLSVAGGFFLASKGHFDLALFLAAVIGTSLVVASGCVFNNCIDRDIDIKMDRTKNRVLVQGLISLKVALVYATLLGVAGLVL LYRVANPLAALFAAIGFVIYVGLYSLYFKRKSVHGTLIGSLSGAMPPVIGYVAVSNSFDLAALTLLVMFSLWQMPHSYAIAIFRFNDYLAASIPVLPVKR GIKVAKKHILLYILAFLIATLMLTLGGYAGMSYMAVAAAMGMYWLYMAWTGYKAVDDKVWARKLFVFSIFTITALSVMMSLDFKVPTELLLTYAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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