Pseudomonas sp. DSM 28140, TU87_RS10095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 4_427964_31.8422, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGGTTTGATGCAGCCGTGGCGGTTTATCCGCATTACAGATCGTGCGTTACGCGGCAAGATTCAACGTTTGGTCGAAGCAGAGCGCGTGCGCACCGCCG AGGCGCTGGGCGAGCGTTCGGATGAATTCATGACGCTCAAGGTCGAAGGCATCAACGACTGCGCCGAAGTGTTGGTGGCCGCGTTGATGGATGACCGCGA AAAGCACATTTTTGGCCGTCGCACCTTGCCGGAAATGGACATGGCGTCGTTGTCCTGTGCCATTCAAAACCTGTGGCTGGCCGCGCGGGTTGAAGGGTTG GGCATGGGGTGGGTGTCGTTGTTCGAGCCGCAGGCACTGGCAGATTTACTCGGCCTGCCACCCGGGGCGAAGCCGCTGGCAGTGTTATGCCTGGGGCCGG TTGCGGCGTTTTACCCGGCGCCGATGCTGGTGCTGGAAGGGTGGGCGCAAGCGCGACCACTGAACGAATTGGTGTACGAGAACTATTGGGGAGTGAGTCC
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| DNA Sequence for Gene |
>TU87_RS10095
ATGAGTGTGGCGTTACTGTGCGTCGCCGGTGTGGCGTTGGATGCGCTACTGGGTGAGCCAAAACGCTGGCATCCGCTGGTTGCGTTTGGCCGTATGGCTG AGCGTATCGAGCAACGTTTTAACTCCGGCGGACGGGGTTGGCGCAGTCATGGGGTGACGGCCTGGGTGCTGGCGGTCGTCCCGCTGACGATCCTGGCCAC GGCGCTGTCGTGGCTGCCCTATATCGGCTGGTTGGTGGAGATCGCGGCGCTGTATTGCGCGCTGGGCATGCGCAGCTTGGGCGAGCATGTGCAGCCGGTG GCCGAGGCGTTGCGCAGTGATGACCTGGAGACCGCACGCACCCGCGTCGGGTATCTGGTCAGTCGCCAAACCAGTGAACTGGACGCCACCGACGTCGCGC GCGCCGCCACCGAGTCGGTGCTCGAAAACGGCAGCGACGCTGTGTTTGCCGCCCTCTTCTGGTTTGCCGTGGCGGGCGCGCCGGGCGTGGTGCTCTACCG GTTGAGCAACACGCTGGACGCCATGTGGGGCTATCGCAACGAACGGTTTGAGCGTTTTGGCTGGGCCGCTGCGCGCATCGACGATGTACTCAATTACATC CCGGCACGTCTGGTGGCGTTAACGTACGCCCTGTTGGGCAAAACGCGGCTGGCCTTGCAGTGCTGGCGCAAACAGGCGCCGCAGTGGGACAGTCCCAATG CTGGCCCGGTTATGGCGGCGGGTGCCGGTGCGCTGGGTGTGGAGCTGGGAGGCCCGGCGATTTACCACGGTGAGTTGCACCAACGCCCGCAGTTGGGTGA AGGCCCGCCCGCCGATGCCGACGCCATCGAGCGCGGCTGGCAGTTGGTACAGCGCGGTGTGTGGCTGTGGTTGTTGATCTTGTGCGTGTGGAGTGAATTC TATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACGGTGGGCGTTTACGTCAGGCAGCGCTGCAATACGGTATTGGCGAAACCGACTGGCTGGACTTGTCCAGCGGTCTGGCGCCCTGGCCTTTTGCGGTG CCTGCGATTGCTGAACGGGCCTGGGCGCGTCTGCCTGAAACCGACGACGGGCTTGAGCACGCCGCGTGCGCCTATTACGGCGCGCCGAACGCGCTGCCCG TGCCGGGTTCGCAATGTGCCATCCAGTTGCTGCCGCGCCTGCGGCGTACAGGCAAAGTCGGGGTGTTGTCCCCGTGCTATGCCGAGCATGCCGAAGCCTG GCGGCGCAACGGGCACGTCGTGCGTGAAGTCATGGAGCAAGAAGTCGACTTCTACCTCGACACGCTGGACGTGCTGGTGGTGGTCAACCCCAACAATCCC ACCGGCCTGAGCCTGTCGCCCGAGCGCTTGCTGGAGTGGCATGCGCGGTTGGTGACGCGTGGCGGCTGGCTGGTGGTGGACGAGGCGTTCATGGACAACA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLCVAGVALDALLGEPKRWHPLVAFGRMAERIEQRFNSGGRGWRSHGVTAWVLAVVPLTILATALSWLPYIGWLVEIAALYCALGMRSLGEHVQPV AEALRSDDLETARTRVGYLVSRQTSELDATDVARAATESVLENGSDAVFAALFWFAVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAARIDDVLNYI PARLVALTYALLGKTRLALQCWRKQAPQWDSPNAGPVMAAGAGALGVELGGPAIYHGELHQRPQLGEGPPADADAIERGWQLVQRGVWLWLLILCVWSEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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