Pseudomonas sp. DSM 28140, TU87_RS10085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 4_427964_31.8422, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGGCGTTCATGGACAACACCCCCGATTTGAGTCTGGCAGCGCAGAGCCATCGCGCCGGTCTGATCGTGCTGCGTTCATTCGGCAAGTTCTTCGGCCTGG CGGGCGTGCGTCTGGGCTTTGTGCTGGCTGAACTCAAATTACTCAAATTGCTCGCCGAGCAAGTCGGGCCATGGGCTGTCAGTGGCCCGACGCGGGTGCT GGGGCAAGCGTGCCTGCTCGATTACGAGGCGCATGCGCGTCAGCGCGAACGCAGCGAGCAGGCCAGTGAACGTTTGGTTGCGCTGTTAAGCCAATACGGC CTGCCGCCTTTGGGCGGTTGTGCGCTGTTCCAGTGGCTGATCACGCCGCATGCCGAACGCTTGTACGACTTCATGGCGCGGCGCGGCATTCTGTTGCGTT TGTTCCCCCACAACAGCAGCGTGCGTTTGGGCCTGCCTGGCGAAGAGGCAGACTGGCTCAAACTTGAACACGCCTTGCAGGCTTATGCCCAGGAAACCCC
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| DNA Sequence for Gene |
>TU87_RS10085
ATGAGCACATTGATGGTGCAAGGCACGACGTCTGACGCCGGTAAAAGTACGTTGGTGACGGCGTTGTGTCGCTGGGTGACCCGTCAGGGCGTCGGCGTGG TGCCCTTCAAGCCGCAGAACATGGCGCTCAACAGTGCCGTGACCCCCGAGGGGGGCGAGATCGGCCGCGCACAAGCGGTTCAGGCGCAGGCCGCGGGGCT AGCGCCACACACCGACATGAACCCGGTGCTGCTCAAACCTAACAGCGACACCGGTTCGCAAGTGATTATTCACGGCCGCGCCGTGACCAGCATGAACGCG GTGGCTTACCACGATTACAAAGCCATCGCGATGCAAGCGGTGCTGGCCTCGCATCAACGCCTGAGCGCGGCCTACCCGGTGGTCATGGTCGAAGGTGCCG GCTCGCCCGCCGAGATCAATTTGCGCGCCGGTGACATTGCCAACATGGGGTTTGCCGAAGCCGTAGATTGCCCGGTGATCCTGATTGCCGACATCAATCG CGGCGGGGTCTTCGCGCATTTGGTCGGCACCCTTGAGCTGCTGTCCGAGAGCGAGCAGGCGCGGGTCAAAGGGTTCGTCATCAACCGTTTTCGCGGTGAT ATCGCGCTGCTTCAACCGGGTCTGGACTGGCTGGAGCAGCGCACCGGCAAACCGGTGATCGGCGTGCTGCCATACGTGATGGACTTGCACCTTGAAGCCG AAGACGGCATTGATCAGCGTCAGATCGAGAAACACGCGCACGTGCTCAAGGTGGTGGTGCCCGTGCTGCCGCGCATCAGCAATCACACGGACTTTGACCC GCTGCGCCTGCACCCGCAGGTGGACTTGCAGTTTGTGGGGCCGGGGCAGCCGATACCGCCTGCGGACTTGATCATCCTTCCGGGTTCCAAAAGCGTGTGC AGTGATTTGGCCTACTTGCGCGCCAATGGCTGGGACACGGCCATCAGCCGTCACCTGCGCTATGGCGGCAAAGTGCTGGGGATTTGTGGGGGGTTGCAGA TGCTCGGCGAGCACGTCCACGACCCGCTGGGCCTTGAAGGGCCGTCGGGTTCGAGTGCCGGTTTGGGTTTGTTGGCGTTCAGCACCCGGCTTGAAGCTGA AAAACAACTGCGCAACGTGCGCGGGCGTCTGACTCTGGAAAACGCTGAGGTCAGCGGTTATGAAATCCATGCGGGCGTTACGACCGGGCCTGCGCTTGAG CTGCCCGCGGTGCAGTTGGAGGACGGGCGCTGCGATGGCGCGCTCAGTGCCGACGGGCAGATTCTGGGCACCTACCTGCACGGTATGTTCGAGTCACCGC CAGCCTGTAGCGCGCTGTTGCGCTGGGCCGGATTACATACCGTGCAAACCGTGGATTACCACGCCCTGCGTGAGCGTGACATTGAACGGCTGGCCGACTT GGTAGAAAACCATCTCGACACCGCCTTTCTGCGCGAACTCTGTGGGCTTGCCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCGTGATGACAGGCGCAGAGTGCTGCGTCTTTTAGAGGTGGACGAACATGTTGCAACTGATTTTGGGCGGTGCCCGCTCGGGTAAAAGCCGCTTGGCC GAGAAGCTTGCGGCCGACTCGGGCTGTGCGGTGACCTACATTGCTACCAGCCAACCGCTGGACGGCGAGATGAACGAGCGCGTGCGCCACCACCGTGAAC GCCGTCCGCCCCATTGGGCATTGATTGAAGAACCTATCGAACTGGCCCGTGTGCTGCGTGAAAACGCGCGCGTCGATACCTGCCTGCTGATCGACTGCCT GACGCTGTGGCTGACCAATCTGCTGATGCTCGAAAACCCGCAGCGCCTGACTGAGGAGCGTGATGCATTGCTGCAATGCCTGGGCGAGCTACCGGGTGAA ATCCTGTTTGTCAGCAACGAGACCGGCATGGGCGTTGTCCCGCTGGGCGAGCTGACCCGTCGCTTTGTCGATGAAGCCGGCTGGCTGCATCAAGCGTTGG
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| Amino Acid Sequence |
>cobyric acid synthase
MSTLMVQGTTSDAGKSTLVTALCRWVTRQGVGVVPFKPQNMALNSAVTPEGGEIGRAQAVQAQAAGLAPHTDMNPVLLKPNSDTGSQVIIHGRAVTSMNA VAYHDYKAIAMQAVLASHQRLSAAYPVVMVEGAGSPAEINLRAGDIANMGFAEAVDCPVILIADINRGGVFAHLVGTLELLSESEQARVKGFVINRFRGD IALLQPGLDWLEQRTGKPVIGVLPYVMDLHLEAEDGIDQRQIEKHAHVLKVVVPVLPRISNHTDFDPLRLHPQVDLQFVGPGQPIPPADLIILPGSKSVC SDLAYLRANGWDTAISRHLRYGGKVLGICGGLQMLGEHVHDPLGLEGPSGSSAGLGLLAFSTRLEAEKQLRNVRGRLTLENAEVSGYEIHAGVTTGPALE LPAVQLEDGRCDGALSADGQILGTYLHGMFESPPACSALLRWAGLHTVQTVDYHALRERDIERLADLVENHLDTAFLRELCGLA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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