Pseudomonas sp. DSM 28140, TU87_RS09865
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 4_427964_31.8422, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGAGGTAATGCTTAAGGTCTTGTATGGCTTGAAGAATTTCGAGGGCAAATCGAAATTCAAGACATGGCTATATAGCATCACTTACAACGAATGCATTACG CAGTATCGGAAGGAACGGCGAAAGCGTCGCTTGATGGACGCATTAAGTATTGACCCCCTCGAGGAAGCGTCTGAAGAGAAGGCGCCGAAACCTGAGGAAA AGGGCGGACTTGATCGCTGGCTGGTGCATGTGAATCCGATTGACCGGGAGATTCTTGTGCTGCGTTTTGTCGCAGAACTGGAATTTCAGGAAATCGCAGA CATAATGCATATGGGTTTGAGTGCGACGAAAATGCGCTACAAGCGTGCTCTTGATAAATTGCGTGAGAAATTTGCAGGCATTGCTGAAACTTAGTTCAGC GCAAATAGCTCTACGTGTAGGTAAGTTCTGATAGACTTGCCGCCGAGTTGTCCCCCGGTATGTGGGACTGCTTTACAATCACCAGATGGGGATTTAACGG
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| DNA Sequence for Gene |
>TU87_RS09865
ATGAAACTGAAAAACACCTTGGGCATTGCCATTGGTTCCTTTGTAGCCGCAACTTCGTTCGGTGCCCTGGCACAAGGCCAAGGCGCGGTCGAGGGTGAAC TGTTCTACAAAAAACAGTACAACGACAGCGTCAAGCACGTAGAAGACGGTTACAACCCAGGCGCATCGATCGGTTACTTCCTGACCGACGACGTTTCGTT GAACCTGACCTACGACAAGACTAACCACACCCGTTCGAACGACGGCACTGGCAACCAGAAAATCAAAGGCGACAACTTTGGTCTGAACGCTCAGTACCAC TTCGGCACCGTTGGTGACGCTCTGCGTCCATACGTTTCCGGTGGTGTTGCTCACAAGAGCATGACCAACGTGAAAGACGATGGCCACAGCGGTCGTGACC AGTCGACTTTCCTGACTGCAGGCGCTGGTGTTAAGTGGTACATCACTGACAACCTGTTTGCCCGTGCAGGCGTTGAAGCTGACTACAAACTGGACAACGG CAAGTGGGACTACGCGCCTACCGTTGGTCTGGGTATGAACTTCGGCGGCAGCGGCGGCAAAGTAGCTCCTGCTCCAGTTCCAGCTCCAGCACCAATCGCT GAGCCAGAACCAGAAGCTCCAATCGCTGAAGTTGTTCGCGTTGAACTTGACGTGAAATTCGACTTCGACAAGTCGGTTGTTAAGTCGCAGTACATGCCTG ACATCAACAACGTTGCTGATTTCATGAAGCAGTACCCTGCGACCACTACCACTGTTGCTGGTTACACTGACAGCGTAGGTCCAGACGCTTACAACCAAAA ACTGTCCCAGCGTCGTGCTGACGCTGTTCGTTCAGCTCTGGTTAACCAAGGTGTTGAGTCTAACCGTGTAGCCGCTGTTGGCAACGGCGAAGCTAACCCA GTTGCTTCCAACGCAACTGAAGAAGGCCGTGCTCTGAACCGTCGCGTAGAAGCAACCGTTCAAGCTGAAGCTAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTTTAGCTAGCCTGTACAGAAAAGCCCGGCTTAGGCCGGGCTTTTCTTTGCCTGCGATTTGGTGAATGGTGCATTTTTGACCCGTATACCTCATTGCCC GCGACTGCCTCTCGCTTGCCAAGGCGATGCCCGGCTATAATCGCCGGCTCTTTCAGTTGCCTTTCGAGACCATCGAGCCCATGTATAACCTGGCCCGCCA GTTGCTCTTCAAACTCTCCCCTGAAACCTCGCATGACCTGTCTCTGGACTTGATCGGTGCGGGTGGCCGTCTGGGGCTCAACGGTTTGCTGTGCAAGGCG CCCGCCAAGCTGCCTGTGACGGTGATGGGCCTCGACTTCCCGAACCCGGTCGGTCTGGCCGCAGGTTTGGATAAAAATGGGGCGGCCATCGACGGGTTCG CGCAGTTGGGTTTTGGTTTTGTCGAAATCGGCACGGTCACACCGCGGCCACAGCCGGGCAATCCCAAACCGCGTATTTTCCGTCTGCCTGAAGCGCAAGC
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| Amino Acid Sequence |
>porin
MKLKNTLGIAIGSFVAATSFGALAQGQGAVEGELFYKKQYNDSVKHVEDGYNPGASIGYFLTDDVSLNLTYDKTNHTRSNDGTGNQKIKGDNFGLNAQYH FGTVGDALRPYVSGGVAHKSMTNVKDDGHSGRDQSTFLTAGAGVKWYITDNLFARAGVEADYKLDNGKWDYAPTVGLGMNFGGSGGKVAPAPVPAPAPIA EPEPEAPIAEVVRVELDVKFDFDKSVVKSQYMPDINNVADFMKQYPATTTTVAGYTDSVGPDAYNQKLSQRRADAVRSALVNQGVESNRVAAVGNGEANP VASNATEEGRALNRRVEATVQAEAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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