Pseudomonas sp. DSM 28140, TU87_RS05150

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.30.42.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00228 pdz_new IPR001478 PDZ domain 276 358 8.0E-16
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 35 269 8.4E-97
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 134 154 2.5E-51
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 385 478 5.6E-18
SMART SM00228 pdz_new IPR001478 PDZ domain 388 467 2.9E-11
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 113 125 2.5E-51
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 274 375 1.0E-27
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 246 392 1.6E-9
Pfam PF13180 PDZ domain IPR001478 PDZ domain 390 470 7.3E-10
FunFam G3DSA:2.30.42.10:FF:000037 Periplasmic serine endoprotease DegP-like - - 274 375 4.3E-33
Pfam PF13180 PDZ domain IPR001478 PDZ domain 278 367 3.5E-16
CDD cd00987 PDZ_serine_protease - - 276 365 1.47969E-25
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 234 359 8.02E-26
Pfam PF13365 Trypsin-like peptidase domain - - 104 237 6.4E-35
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 33 368 3.2E-97
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 316 328 2.5E-51
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 33 267 1.31E-70
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 230 247 2.5E-51
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 35 474 0.0
Gene3D G3DSA:2.40.10.120 - - - 34 269 4.4E-84
CDD cd00987 PDZ_serine_protease - - 389 474 9.45483E-17
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 174 198 2.5E-51
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 208 225 2.5E-51
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 389 476 1.06E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.