Pseudomonas sp. DSM 28140, TU87_RS04530
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 2_733184_32.1465, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTCTTTAATCACCGTCGTCGGCCCATTGCTTTTAACGCTGGCAATGCCCTTCTCACGTGCCGCCTCGGTGCTGTATTGCTCGCTGGTGCCAATAATCT GGTGATTGGCCGCCTTGAGGTTGAAGTACGGCTTACCGTCCTTGGCCACTTTTCTCTCATAGCGCTCATCCAGTGGGCTATTGACCTGCACCGAAGCAAT TCCGTTTTTGGCCGCCTCACGCGTGGTGTACTGCTCGCTCACCAAAATCGGCTCGTTATTGGCCGCTTTCAAAACAAACCGGAACTGCCCATTACTGGTT TTGCCCAACTCGTACCCACCCGACATGACGTTTCTCCTGAATGCTGACGGTTTTTTGCATGCCTGAGTAAAGCCTGCGCCCAGCTTTTATCCATTTATCT GCATGAAATGACGAAAGATCAATTTCCATGCAGACAAATAGCAATAATTCTCGATACCATTCGCAGCTTATTTTGCATCGCTGAGCCCCCAAGGATTTTC
|
|
| DNA Sequence for Gene |
>TU87_RS04530
ATGCCAGGCTTAAAACCCGACCCCGCGTTGGCCGAATCCTTCCGCGAGTTCTATACGCAGATTCTGCATTTCCTGCGCAAACGCACCGACAACGCCAGCG ATGCAGCTGACATGACGCAAGACGTTTTCACCCAATGGCTGGGCTATCAAGACCGGGCCAAAGTCGAGCAACCACGGGCTTTTTTGTTCCAGATGGCGCG CAATCTGCTGCGCGATCACTGGCGTCGTCAGCAGGTGCGCCACTCGGCTCACGCCCGGCCGCCTGAGCACGACGCCGAGCCTTTAAGCGATGAGAGGGAT GACCCGATGCTGGCTGCACAGCGCCTGCAACGCCTGGAACAGCTTAAGGCCGTGCTTGCAGAACTCTCGCCCAGACGCCGCGAAGCCCTTATGCTGCACC GCTTTGAAGGTTTGAGTCAGGCACAGATCGCGCAACGCATGGGAATTTCGGTAAGCATGGTGGAAAAGCACATCGCCTTTGCCTTGTTGCACTGCAAGCA ACATCTACATCGGGACAGCGGCAAGGAGCAGCCAAAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCTCTTTTCACGCCAGCGCCGAAGACAGCATTGACGCTGAGGCCGCCCGTTGGTTTGCGCGCAACCGCAATCAGCCCGATCGTCAAAGCCGCGCTCAATT CAGTGCCTGGTACGCCACCCCCGCGCATGCCAAAGCCTATGCTGCATTTGAATCGCTGTGGGGTGATTTGGGCGAACTCAGGCAACTGAATAAACCGCGT GTACTCCCCGTAAAGCCACCGGTCAAGCGCCGCTCAGTGCTGGCATTAGCCACTGCGGCAGCCGTGTTGTGCGCCGTGTTTGCATTAAACCTCGGCACCC CCGTTGCACTGCACCAGCAACACATTGCCACACAGGCCAAGGGCGCCAGAACCCTCACACTTCCTGATGGCAGCACTTTGTACGTCAACGCCAACACACA ATTGCGCATCAACTTCAGCGCGCATCAACGCGACATTTTTCTGGATCACGGCCAGCTCTATATCGAGGTGGCAGCCAATAAAGACCAACCCTTGGTGGTG
|
|
| Amino Acid Sequence |
>RNA polymerase sigma factor
MPGLKPDPALAESFREFYTQILHFLRKRTDNASDAADMTQDVFTQWLGYQDRAKVEQPRAFLFQMARNLLRDHWRRQQVRHSAHARPPEHDAEPLSDERD DPMLAAQRLQRLEQLKAVLAELSPRRREALMLHRFEGLSQAQIAQRMGISVSMVEKHIAFALLHCKQHLHRDSGKEQPK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|