Pseudomonas sp. DSM 28140, TU87_RS04400
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 2_733184_32.1465, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCTGGCACGCGGGGAGCCAGGCATCCGCAAAGATGAAACCCATACAAGCACCGCCCTCGCTTTATCGGGGTTTAGAGGCAGACCAGGGCACAAATCAA TTATTTTTCATGACATCGCCGCTTTGAGCATGCTTGTTGCATAAAGCTCGTACATAGTCGCAAGAGCCAGCCAAGGGACGTAAGGCTCTACGGTAAATAA CCATAGCTCAGCCGCAGAAAATTGGAGTTGTTAAACCGTGGACACACAACATCGCGCCATGTGTTTAGCCCTGCTCGTAGTTTCAACAGCCCGTTCAAAC CTTATGACTGCTGCACATTTACGTCATCAAAAATCTGTTTTGCGACGTATCTGTAAAGAAGCTGAAAGCTTTTGAGGGTAAGTATCGCCAATAAGGTCGG CGTGATATAAGTTTGCGCCGACACAAAAAGAAAGAGCCGCCCAGATAAAAATTCAGGTGGGACGGCAGTACTCTTCCTAAAACCAAAGGAGCAAATCACG
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| DNA Sequence for Gene |
>TU87_RS04400
ATGCGCGTGATGAAGTGGAGCATGATCGCACTGGCTGTTTCAGCCGGCACTACACAGTTCGCAATGGCCTCATCCCAAGATGACGCCAAGGGCTTTATTG AAGACAGCACACTGACTTCTAAAACTCGCATGCTTTACATGAACCGTGATTACCGTAATGGCGCTGGCAACATCAGCAAAAACGGTGAGGCGGGCGGCCA TCCTTACAAAAGCGGCTATCGCGAAGACTGGGGCCTGAGCGAACTGCTTAACTACGAATCCGGCTTCACCCAAGGCACCATTGGGGTGGGCGTTGATGCA TTTGCCATGGGCACCGTGCGTCTGGACGGCGGCGCAGGTCGTCAAGGTAACGGCCTGTTCGCAACCAAAAGCGATGGCTCTCCGGAAGACACCCAATCGA AAATCGGTGGCGCTGTAAAATTCCGCCTGTCCGACACCGTACTGAAATACGGCAACCAGTTCGTGGCCAGCCCGGTTTTCTCTACCGACGACAGCCGCTT GCTGCCTGAAGTGGCCACCGGCACATTGATCACCAGCAAAGAAATCAAAGGTCTTGAGCTGACCGCAGGTCGCTTTACCGGCATCAGCTCGCAAACCGGC ATGTTCCACGACAGCCTGCACCTGCCTTCTGCAAACATTGCGGGGGCGACCTACCAGTTCACTGAGAATTTCGTCGGTGGCGTGGCAGCGTCCGACGTTG ACGACTACTTCAAGAAGCAATACGTCAACCTGAACTACACCCTGCCAATCGCTGAATCCCAAGCCCTGAACTTCGACTTCAACGGCTACCGGACCTCCAG CCAAGGCAAGGAACTGGCGGGCGATGTCGACAACAAAATCTGGAGTTTGGCAGCGGCTTACAGCCTCGGCGCTCACAAGTTCACCCTGGCTCACCAGCGC TCAACCGGTGACAGCGGTTACTACTATGGCGTAGACGGCGGTGGCACTATTTTCCTCGCCAACTCCGTGCAGTACTCCGACTTCAACGGCAAAGACGAAC GCTCCTGGCAGGCGCGCTACGACCTGAACATGGCCTCCTACGGCGTGCCTGGCCTGAGCTTCATGACGCGCTACGTCACCGGTGACAACATCTCCACCAC CGACGGCGAAGGCAAAGAGCACGAGTTCAACTTCGAAAGCAAATACGTGATGCAAGAAGGCCCGGCCAAAGACTTGTCCTTCCGCCTGCGTAGCGCGATC TACCGCACCACCAGCAACTACGGCGTAGACACCAACGACGTTCGCGTCATCGTTGAATACCCGCTGAACATTCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAAGCGCCCCAAGGCCTTCATTGCAGAGACGCTTCAGAAAAAACCATGCCCTTGCATAAGGGCATGGTTTTTTTTGCACGGTCAAAAGTTATCTATATAG CAAGCTAACTAACTTATTAGATGCAATGCACCGGCTATCAACACCTATAAACAAACGCCAGAAACAATTAAGGAGGCTTTCGCCCCCTTAATTGCTGCCC ATCCCTGATGATCTACATCAGGCATACGCTGTGCACTCGCTGCAACTTGTTACTCTGCCCGCTCTTGCACCACTCGTATGACACGCTGCGGGAAAGGAAT ATCAATATTTGCAGCCTTCAGCCGATCACGCGACTGCTCATTGAACATAAACAATACATCCCAGTAATTAGGTGTATCGACCCATGCTCTCAACGACATA GTGATCGCACTGTCCCCCAGCGTGGTCACAACCACCACTGGCGCCGGGTCTTTCAGTACGCGCGGGTCATCGGCCAGGGCCAGCAACACTTCACGCACCT
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| Amino Acid Sequence |
>porin
MRVMKWSMIALAVSAGTTQFAMASSQDDAKGFIEDSTLTSKTRMLYMNRDYRNGAGNISKNGEAGGHPYKSGYREDWGLSELLNYESGFTQGTIGVGVDA FAMGTVRLDGGAGRQGNGLFATKSDGSPEDTQSKIGGAVKFRLSDTVLKYGNQFVASPVFSTDDSRLLPEVATGTLITSKEIKGLELTAGRFTGISSQTG MFHDSLHLPSANIAGATYQFTENFVGGVAASDVDDYFKKQYVNLNYTLPIAESQALNFDFNGYRTSSQGKELAGDVDNKIWSLAAAYSLGAHKFTLAHQR STGDSGYYYGVDGGGTIFLANSVQYSDFNGKDERSWQARYDLNMASYGVPGLSFMTRYVTGDNISTTDGEGKEHEFNFESKYVMQEGPAKDLSFRLRSAI YRTTSNYGVDTNDVRVIVEYPLNIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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