Pseudomonas sp. DSM 28140, TU87_RS22535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 22_16881_34.2078, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGCTGCCCTCACCGAAGCTCAAGTGGCCGTGGACAGTGCCCAGCTCAACCTGGACCGCACCGTGGTGCGCAGCCCGGTGGACGGCTATGTCAACGACC GTGCGCCACGGGTCAATGAGTTCGTGACCGCCGGGCGCCCGGTGTTGTCGATTGTCGACAGCAGTTCGTTTCACATCGACGGCTACTTTGAAGAAACCAA ACTCGACGGCATCCACGTCGGCCAAAGCGTCGATATCCGCGTGATTGGCGACAATGCGCGCCTGCGCGGGCATGTCGAAAGCATCGTGGCCGGTATCGAA GACCGTGACCGTAGCAGCGGCCAGAACCTGCTGCCCAACATTAACCCGGCGTTCAGCTGGGTACGTTTGGCGCAACGGATTCCCGTGCGCATCGTGTTTG ACGACGTGCCCGAAGATTTCCGCATGATCGCCGGGCGTACCGCCACCGTCTCGATCATCGAAGACTCACCCAAGGCCAAACCTGCGCAGGAGAACGCGCA
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| DNA Sequence for Gene |
>TU87_RS22535
ATGAAAGCTGTTCACCTGGCAGCCGTAGGGCTGGGTTTGCTGCTGTCGGGCTGTCAGTTGGTGGGGCCTGATTACCACCTGCCCAAAGACGCCGCATTGC AGCGCGCGGATGTGCAGGGTGAGTTTGCGGGCGAGGGCGCCAACGTGATGTCGGCTCCCGTGCCCGCCGATTGGTGGAAGCTCTATCAAGACCCCAAACT CAATGAACTGGTGCGCCAGGCGCTGGCCTCCAACACCGACTTGCGGGTCGCGGCGGCCAACTTGTCGCGGGCGCGGGCGCAAGTTGAACAAGCGCAATCG GCAGGTGGCTGGAGCGGCTCGGTGAAGGCGGGTGCCCAGCGCTTGCAAGAGTCCGGCGAAGCGTTCTTGCTGGCAGATAAAGTCCCGGTCGCCAACGTGG GTGATCTGGGTATCAGCACCTCGTATCAGTTCGATTTGTGGGGCACCTTGCAGCGCGGCATTGAGGCCGCACAAGCCAACGCCGATGCGACGCAGGCCGC CGCCGACACCGCGCGCATTACCTTGGTGGCGGACGTGGTTCGGGCCTACACCCAAGTGTGCGCGGCAAACGAAGAGCACCACATCGCCGAAAAGTCGCTC ACGCTGCAAGCGCAAAGCACACACCTGACCCAACAGTTGCGGGATGCGGGGCGCGGCGACGAAACCCAGGTCACCCGTTCGCAGACGCAATTCAAATCGT TGCGCGCGGAACTGCCGCGCTACGAAGCCTTGCGCCAGTCCGGCCTGTTTCGTTTGTCGATGTTGCTGGCCAAGCCGCTCGACCAACTGCCCGCTGGCGT GGCCACCTGCGCCGAGCTGCCGCATATCGCGCAATTGCTGCCGGTGGGCGATGGCGCTGCGTTGCTCAAACGCCGCCCGGATGTGCGCCAAGCAGAGCGT CATCTGGCGGCGGCCACGGCTGAAATCGGGGTGGCCACCGGCTCGCTGTACCCGGACATCAGCATAGGCGCGAGCATCGGGACTGTCGGCATCATTGATA ACCTGGGCACCGCACCCACCAACCGCTGGGGCTTTGGCCCGCTGTTGAGCTGGACCATTCCTACCAACGGTTCGCGGGCGCGGATTCGTGAAGCCGAAGC CGCCACCCAAGGCGCGCTGGCCAAGTTCGACGGTGTGGTGCTGAACGCCATCCGTGAAACCCAAACCAGTCTGGTGCAATACACCGCGCTGTTGCAGCGC CGCGATGCCTTGGCAGAAGCCGAAGCGTCGGCCAAAACCGCAGCCGATCAAACGCATCAGTTCTTTCAGGCGGGGCGCGAGTCCTTTTTGGCTGACCTGC AAGCGACCCGCACCTACACCGACATGCGCGCGCAACTGTCGGCCGCTAACACCCAGGTAGCCATGAGCCAAATCGACCTGTTTCTGGCCCTGGGCGGCGG CTGGGAAAGTGGACGAACGCAAGCCCCGGCCAACGCGAAACCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGCGTTGCTATGCTCTGAGAGGTCGGTATCAAAACGATGGCTCAGGGCGTCGCGGGTCTTTTAGCCCTCCCCATCGCGCAGGCAATGCTTGATGGGGAT ACTAATAATGAAAAACCCTTATGCTCCCGGTTTCTGGTGTGCGGTGGTCGCGGTGGTGCTGCTGTCTGCGACCTATTTCTACGGCATCATGCTGGCGCAC CAGATCGATAAGGCGATGTTTTTCCTCGACAGCGCCAGTGCGTTGATTGCGGTACTGGCCATTGCGATGGTGGCGTGGGCGACGGTGCAAACCCGGCACA TCAAAAAGCGCCAGGTCGAAGAGGGCCAGACCCGGGTCTTGATCTGGGACGCCAAAGTCGCGCTGCGGCGGGTCGAAACCGTTTTCGACCGCTACTTTTG GGGCAGTTATTGGCAGCCGGGGCGTACGTTCCAGGAATTTATGGGCGAACTCACCGGCACCCCGCTGGAAAAAAGCCTCGACGCCTTGAAAACCCAATGC
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| Amino Acid Sequence |
>RND transporter
MKAVHLAAVGLGLLLSGCQLVGPDYHLPKDAALQRADVQGEFAGEGANVMSAPVPADWWKLYQDPKLNELVRQALASNTDLRVAAANLSRARAQVEQAQS AGGWSGSVKAGAQRLQESGEAFLLADKVPVANVGDLGISTSYQFDLWGTLQRGIEAAQANADATQAAADTARITLVADVVRAYTQVCAANEEHHIAEKSL TLQAQSTHLTQQLRDAGRGDETQVTRSQTQFKSLRAELPRYEALRQSGLFRLSMLLAKPLDQLPAGVATCAELPHIAQLLPVGDGAALLKRRPDVRQAER HLAAATAEIGVATGSLYPDISIGASIGTVGIIDNLGTAPTNRWGFGPLLSWTIPTNGSRARIREAEAATQGALAKFDGVVLNAIRETQTSLVQYTALLQR RDALAEAEASAKTAADQTHQFFQAGRESFLADLQATRTYTDMRAQLSAANTQVAMSQIDLFLALGGGWESGRTQAPANAKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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