Pseudomonas sp. DSM 28140, TU87_RS03670
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 1_831734_30.8673, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGTGACGCACCAAGAGCGATTCATCTCAGGAACTTTTGCCGAGAAAAAACGGACTGAATCCGGTAGTCTCACCACTTTATTGAAAGGAGCACTCTCTC ATGGCTAAAGCCACCGCCCGTCACATCCTTGTTGCCAGCGAAGCCAAGTGCAATGAACTGAAAACACAAATCGAAGGCGGCGCTGATTTCGCTGAAGTCG CCAAAGCCAACTCTACTTGCCCTTCAAGCCGTCAAGGTGGCGATCTGGGTTCTTTTGGTCCAGGCCAAATGGTTAAAGAATTCGACACTGTAGTGTTCAG CGCACCGATTAACGTGGTTCAAGGCCCGGTTAAAACCCAGTTCGGCTACCACCTGCTAGAAGTCACCAGCCGTCAGGACTAACTCTGCGGTTTTGTGTGA TAACGGCCCGCCCTTTGGTGGGCCGTTTCGTATCCGCAGCCTTAACCTCGTGCTACGTTTCCTCATTCATGAATGAATCGTGTCTCACTTGGGGGAATTG
|
|
| DNA Sequence for Gene |
>TU87_RS03670
ATCATGAGCCTTAAGGGTAAAACTGCATTGGTAACCGGCTCCACCAGTGGCATTGGTCTGGGCATTGCGATGAGCCTGGCCAAAGCGGGGGCTGACGTAG TACTCAACGGGTTCGGCGATGCCAGCAAAGTCATCGCAGACGTTGAACAATTCGGTGGTCGGGTTGGCCATCATGCTGCCGACGTCAGCGACCCCGCCCA GATTGCCGACATGATCAGCTATGGCGAACGTGAATTCGGCGGCATTGATATTCTGGTCAACAACGCAGGCATCCAGCATGTGGCCAGCGTCGAACAATTC CCGGTTGAGCGCTGGGACGCGATCATCGCCATCAACCTGTCAGCGGTGTTTCATAGCACCCGCCTCGCCCTGCCCGGCATGCACAAGCGCAATTGGGGAC GCATCGTCAATATCGCATCGGTTCACGGGCTGGTTGGCTCGGCGGGCAAATCGGCCTATGTAGCTGCCAAACATGGCGTGATCGGTCTGACCAAAGTCGT AGGACTGGAAACCGCCACCAGCAACATCACCTGCAACGCCATCTGCCCCGGCTGGGTGCTCACCCCACTGGTGCAAAATCAAATTGATCAACGCATCAGC CAGGGCATCGACCCCTATCAGGCCCAACATGACCTGCTGGCCGAGAAGCAGCCCTCTCTGGAGTTTGTGACGCCGCCTCAACTGGGAGAGTTGGTGTTAT TTCTGTGCAGCGAAGCAGCCAGCCAAGTGCGCGGCGCCGCCTGGAATGTCGATGGGGGTTGGCTCGCGCAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAGCACATATTTACGCCCCCCCAACATGCAAATATGCACGTTTGCCCTGCACTTATTCCGGTTGTAATGGGCAAATTTGCACTGTTAGCATCGAGCATCG TTCGCCTGCGGACAGCCCTAAAAACAAGACAAAGCAGGGAGTTAGTGATGACTGCTCAGGTTTCTTCAACACCGGCACCGTATGTTGAGGTCGTTCAATC CGAAATTCTGGCTCACGTGCGCAACCATATTGGCCACCTGACCCTGAACCGCCCAAGCGGCCTCAATGCCATCAATCTGAACATGGTGCGCGAACTTCAG CGTCACCTCGACACGTGGGCCAAAGACGTCAACGTCAAAGCGGTGGTTCTGCGCGGTGCGGGTGACAAAGCCTTCTGCGCAGGCGGTGATATCCGCTCGC TGTACGACAGCTACCGCCATAAAAACTCCCTGCATACCGCGTTCTTCGAAGAGGAATACGCCCTCGATCTGGCCCTGCACCACTACCCCAAACCCGTTCT
|
|
| Amino Acid Sequence |
>3-hydroxybutyrate dehydrogenase
MMSLKGKTALVTGSTSGIGLGIAMSLAKAGADVVLNGFGDASKVIADVEQFGGRVGHHAADVSDPAQIADMISYGEREFGGIDILVNNAGIQHVASVEQF PVERWDAIIAINLSAVFHSTRLALPGMHKRNWGRIVNIASVHGLVGSAGKSAYVAAKHGVIGLTKVVGLETATSNITCNAICPGWVLTPLVQNQIDQRIS QGIDPYQAQHDLLAEKQPSLEFVTPPQLGELVLFLCSEAASQVRGAAWNVDGGWLAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|