Pseudomonas sp. DSM 28140, TU87_RS01925
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 1_831734_30.8673, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGTCGTGATCCGGCGGGCTTCAAAGGCCCGGCGCTGTTGCAGAACATTCTTGAAAGCGGTCTGCGTTTTGGTGAGATGGATATTTTCCACCGCCACGAA AGCATGGCCGGTAACGGCGAAGTGCTGTTCTCGATGGCTAACGCCGTCAAGCCGGGCGTGTTTGATCTGGACGACATTGATCTGTTCAGTACCCCGGCCG TCAGTTTCTTCCTCGGCTTGCCAGGCCCGCGTCATCCCAAGCAGGCGTTTGATGTGATGGTCGCTGCTGCACGCAAACTGTCGCAGGAGCTTAATGGCGA GCTTAAAGATGATCAGCGCAGCGTGTTGACCGCGCAGACCATCGAACACTACCGTCAGCGCATCGTTGAGTTTGAGCGTCGCGCACTGACCCAAAAGCGC TAAACCTTGTGGGAGTCAGCTTCTTTGCTCCCGCTCAAACGCGAATGAATCAACTCAAGAGCAGCCACGGCTGCTCTTTTGCATTGTGAGAGAACACCCC
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| DNA Sequence for Gene |
>TU87_RS01925
ATGACTGCCGCCCATACTCGAATCCTGGCGCTGCGCGCTGAACTGGACCAGCACAACTATCGCTATCACGTCCTCGACGAGCCAAGCATCCCGGACGCTG AATACGATCGCCTGTTTCGCGAGCTCAAGGCGCTGGAAGCTGAGCATCCGCAGTGGATCACCCCTGATTCACCGACCCAGCGGGTCGGCAGTGCGGCGTT GTCGGCCTTTACGCAAGTGCGACATGAAGTGCCGATGTTGAGTTTGGGTAACGCCTTCGATGAATCGGACATGCGCGAGTTTGACCGGCGCGTGCAAGAA GGGCTGGATTTGCCAGCAGCTGATTTGCTGGGTGGCGGCGCCGAGGTTGAATACAGCTGTGAGCCCAAACTGGACGGCCTGGCGGTGAGCCTGCTTTACC AGGGCGGGCATCTGGTACGCGGTGCCACGCGCGGTGATGGCACCACGGGCGAAGACATCAGCGTCAATGTGCGCACCGTGCGCAATATCCCGCTCAAGCT GCACGGCAGCGGCTGGCCCGCAGTGCTGGAAGTGCGTGGCGAAGTGTTCATGTCCAAGGCCGGGTTCGACCGTTTGAATGAAGCCCAACTGCAAGCGGGT GGCAAGACGTTCGCCAACCCGCGTAATGCGGCGGCGGGCAGCTTGCGTCAACTGGACTCCAGGATCACCGCCAGCCGCCCACTTGAATTCTGCTGTTATG GGTTGGGGCAAGTCTCGCAAGAGTTTGCAGATACCCACATCGGTAACCTTAAACAACTACAGCAATGGGGCATGCCCATTAGCCATGAGCTGAAACTGGC CAAGGGCATTGGCGAGTGTCTGGATTACTACCGCGACATTGGCGAACGTCGTGCGGCGCTGCCTTACGAGATCGACGGGGTGGTGTTCAAAGTCAACAGT TTGGCCTCGCAGCGCGAATTGGGTTTTCGGGCGCGTGAGCCGCGGTGGGCGATTGCGCACAAATTCCCGGCAATGGAAGAGCTGACCCAATTGCTGGATG TGGAGTTTCAGGTGGGCCGTACCGGTGCAGTGACGCCCGTCGCTCGCCTCAAGCCCGTCAAGGTGGCTGGCGTGACGGTATCCAATGCGACATTGCACAA CATGGATGAAGTGGCGCGTTTGGGGCTGATGATTGGCGATACCGTGATCATTCGTCGTGCAGGGGATGTGATTCCGCAGGTGGTGCAAGTGGTGCTCGAA CGCCGTCCAGACGACGCGCGCCCTGTGCACATCCCGCAAAGCTGCCCGGTCTGCGGTTCCCATGTTGAGCGCACACAACTGGTCAAGCGCAGCAAGGGTC GCGAAACCGTCAGCGAAGGGGCGGTGTACCGGTGTGTGGGGCGTCTGGCCTGCGGTGCGCAACTCAAACAGGCGATTATTCACTTTGTCTCGCGCAGAGC GATGGACATCGAAGGTCTGGGTGAGAAAAGCGTTGAGCAGCTGGTGGATGAGGGGTTGGTGCGCTCGCCAGCGGACTTGTACACCCTGAATTTCGAACAG ATCGTCGATCTTGAAGGTTTTGCCGAGTTATCGAGCAAGAATCTGTTGGCTGCGATTGCCGACAGCAAGCGTCCCACCTTGGCTCGCTTTATCTATGCAT TGGGTATTCCAGATGTAGGAGAAGAGACGGCCAAGGTGCTGGCGCGTTCTCTGGCCTCGCTTGAGCGCGTACAGCGTGCGTTGCCGCAAGTGCTCACGTA TTTGCCGGATGTCGGTCTTGAGGTGGCGCACGAGATCCACAGCTTCTTCAGTGATGAGCATAACCGGCAGGTCATCAGCCAATTGCTGGAGCGCGGGCTT GAATTGCAGGATCAAGGCGATCTGGGCGCCGAATTTGCGGCCAGCACCACGTTGGGTGGTTTGATCGACAAACTGCACATTCCGTTTGTTGGGCCGGGCG GTGCGCAAAAACTCGCCGACAAGTTCGGCTCGCTCCAGGGCGTGATTGATGCTGACTGGCTGGATATGCGCCAAGCCTTGCCGGAAAAACAGGCCAAGGC GGTGCGTGAGTTTTTTGACAGCCCTGAAAATGCCCGAGTGGCACTGGCGATCGAGGCGCAACTGCGTGATTTCGGCATGCATTGGCAAAGTGAGAAAAAA ACCGTCGCCGGGTTGCCCTTAGCGGGTCAGACGTGGGTGTTGACGGGTTCGCTGGAGTTGATGAGTCGCGACCTCGCCAAGGACAAGCTCGAAAGCCTGG GCGCTAAAGTCTCGGGTTCGGTGTCTGGCAAGACGCACTGCGTGGTGGCGGGGCCGGGTGCTGGCTCCAAGCTGACCAAAGCCAATGAGTTGGGCCTCAA GGTGCTGGATGAGGAGGCGTTTGTCGCGTTTTTGAGCGCGCAGGGCATCGCGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGTAGCGCTGGCGAAGGTAGCGTGCGACAGCGCAGGAATCGGACGCGATCTGAGCGAGCGGCTACGGGTGAGGATGAAAAATCCAAGTGCTTGAGCCTGT TCATTTTTTTATTCTTGAATAGGCGGTTGTAAGTTTTCCTCAGACAGGTACAATGGCGCCGTTCGCTGCTAGGCGAACGTTGTTATGGTGACCCTATCGG TCCCTCCGCAACGATTACCCGTGAACCTGGTCAGAGCCGGAAGGCAGCAGCCACAGCGGGAACATTGTGTGCCGGGGTGTGGCTGGTGGGGTTGCCTCCA TTTCAAAATCTCATTTTTTCCTTCGTAAGAACACGACCGAACTATCGGACTTTTCGTGATTTTTTGCTGTGGGTGGCTGTCTGCTCTTTGAAACAAAATG GGTGGGTCTGGCCTGATTTTATATATCGAATATGTCTTTCGAATGCATTTATATCGTCTACATTTCTAACCAGCAGGCTGTTTATTCGCTCAGGGTATAG
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTAAHTRILALRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPQWITPDSPTQRVGSAALSAFTQVRHEVPMLSLGNAFDESDMREFDRRVQE GLDLPAADLLGGGAEVEYSCEPKLDGLAVSLLYQGGHLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPAVLEVRGEVFMSKAGFDRLNEAQLQAG GKTFANPRNAAAGSLRQLDSRITASRPLEFCCYGLGQVSQEFADTHIGNLKQLQQWGMPISHELKLAKGIGECLDYYRDIGERRAALPYEIDGVVFKVNS LASQRELGFRAREPRWAIAHKFPAMEELTQLLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLE RRPDDARPVHIPQSCPVCGSHVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQLVDEGLVRSPADLYTLNFEQ IVDLEGFAELSSKNLLAAIADSKRPTLARFIYALGIPDVGEETAKVLARSLASLERVQRALPQVLTYLPDVGLEVAHEIHSFFSDEHNRQVISQLLERGL ELQDQGDLGAEFAASTTLGGLIDKLHIPFVGPGGAQKLADKFGSLQGVIDADWLDMRQALPEKQAKAVREFFDSPENARVALAIEAQLRDFGMHWQSEKK TVAGLPLAGQTWVLTGSLELMSRDLAKDKLESLGAKVSGSVSGKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVAFLSAQGIAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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