Pseudomonas sp. DSM 28140, TU87_RS00675

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 184 493 8.37E-77
Pfam PF00672 HAMP domain IPR003660 HAMP domain 161 208 5.6E-8
SMART SM00304 HAMP_11 IPR003660 HAMP domain 163 216 7.4E-8
Gene3D G3DSA:1.10.287.950 - - - 165 493 9.6E-72
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 231 492 1.9E-69
CDD cd11386 MCP_signal - - 258 453 1.528E-52
SMART SM00304 HAMP_11 IPR003660 HAMP domain 251 318 55.0
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 138 492 3.8E-104
Coils Coil Coil - - 481 493 -
CDD cd06225 HAMP - - 169 209 4.01061E-7
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 304 460 1.1E-42
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 163 493 5.5E-93

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.