Pseudomonas sp. DSM 28140, TU87_RS22115

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. DSM 28140 18_43233_30.3909, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TAATGTTTAAAGCAGATGAACGTATTCAAGCGCGCAACTTCGAAGCGGGTAGGAAGTTGCTGTCAGAAGCTGCATCCATGGAGCCCACTCGAAAAGAGCC TTGGTTGCGTCGAGCTGAGCTGGAGTTCAAAGCTGAGAATTATGGTGCCGCGATTCTGGCCGCGCAGGAAGTGTTGCAGCGCGATGCAGCTAATACCCGT GCTGACGCCATTCTGACCGTCTCGGGCTTGCGAGTCGCGGTGCAGTCGTTGGGAAGGCTACGCGATGAAAAAGACGTCAACGGCCCAGTGCATCAAGAGG CGCAAAAACTTGCTGCGAGACTGCGCGAAACCCTGGGAGCCAAGGCTTTGCTGCCCAAGGCCAAAACTGCGCCACGTAAGTCGGTGCCTGCACCCGCCAA AGCCACGCCAGCGGCATCGAGCTCCAATCCGTTCTCCAGCCTGCCGGGCATGAATTGAGCGTGAACCTTAAGTAAGTATTTGATCGAGGCGGTACCTGCT
DNA Sequence for Gene
>TU87_RS22115
ATGGCTAAGAAGGAAAGTGTGCAAAAACGCCTGCAAAAGGTGCGGGCGCCGAGGATTCAGCTGACCTACGACGTTGAGATTGGCGATGCCATCGAGCAGA AAGAGCTGCCCTTTGTGGTCGGTGTATTGGGTGATTTTTCCGGGAATCCGGAAACACCTCTGGCTCGTCCCAAGGATCGCAAATTCGTGTCGCTTGATCG GGATAATTTTGACGAGGTCATGGCGGCGATGACGCCACGTGCCACGTATCGGGTGGCCAACGCACTGACCGGGGAGGGGGAGTTCGGCGTGACCTTGAAC TTTCAATCACTGGAAGATTTTGGACCAGAGGCACTCATTCGCCAGGTGCCAGCACTGCATAAGCTACATGAGGCCCGTAGCAAACTGGCAGACATGCGCA ACAAGATCTCGACCAACGAGACCCTTGAGGATGTGCTCAGCGACGTGCTGACGAACACCGAGCAGATGGCCACGATTCGACGTGAATCTCAGGGGGATGT ATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACCGCAAACGCTTCTGGTGATATGAGTGCTCCACTGTTAAATGAAGGGTCCAGCTTGCTTGATCAGGTGGTCGAGCAAAGCAAGATTGCCAAATCCGA GTCGGAGCACCTTCGAGCGCGTGACCTGATCGCCGAGTTGGTTGCTGAGGTCATGCAGGGTACGGTCGTGGTCTCGGAGAACCTCGCTCGTAGCCTGGAT GCGCGTATTGCAGAGCTGGATCGTATGCTCTCGGAACAGCTGTCGCTGGTCATGCACGCCGCAGAATTTCAGAAGCTCGAATCCAGTTGGCGCGGCTTGC ACCATTTGGTGACTGAGTCGACTACCGGGGCCATGATCAAAATCAAGGTTTTCAACGCCTCGAAAAAAGAGCTGATGCGCGACTTCAAGGCCGCATTGGA GTTCGACCAAAGCTCGCTATTCAAGAAGATCTACGAGGAAGAGTTTGGCACCTTTGGTGGTGCGCCGTTTGGTGCATTGATTGGTGACTATGCGATCACC
Amino Acid Sequence
>type VI secretion protein
MAKKESVQKRLQKVRAPRIQLTYDVEIGDAIEQKELPFVVGVLGDFSGNPETPLARPKDRKFVSLDRDNFDEVMAAMTPRATYRVANALTGEGEFGVTLN FQSLEDFGPEALIRQVPALHKLHEARSKLADMRNKISTNETLEDVLSDVLTNTEQMATIRRESQGDV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site