Pseudomonas sp. DSM 28140, TU87_RS21140
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 15_79301_34.6876, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTCAACCAATGCACTTTGGCGCATTCCAGGGCGCGCGCCTGCGCATAGACGTGTTCGATCAACTGGCGACCGACCCCGGTGCCACGCAAGTGCGGGCTA ACGTACAAGTCTTGCAGGTAGCACGAGTTGCCAATGCTCCAGTTAGAGCGATGAATAACGGTCTGCACCATGCCTACCGCCTCATCGTCTTGCCAGGCAA GGGCCAGATGAGTCGGTTCGGCCGGGTCCATGAAACGTTGCCAGGTGGATTGGCTGACGTCGGCGGGTAGCTCGGTTTTGTAAAACGTAAGGTACGCCTG CCAGAGTGGCATCCACACATCGTGGTCGGCGTCAGTGGCGGGTTTGATCTGGATGTTGGAGGTCATGAAGCTATTCCTTAGCGATTCAAGAGGTCTGGAC TTCGCACCTACAGAGAATGTTCTTGGCGAATGCCTGCATCCTAGGCAGGCTATTGGCCCGTTGTAAGAGCCACTAACGACCCATTTCGTAGGTCCAATGT
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| DNA Sequence for Gene |
>TU87_RS21140
ATGCCTGATTCAGCCTTGCCTATCGCTTTCAACCCTGCGGGTATCGAGCTTGATCCTAAAAAAGGATTGAGCCGCCAGTTGTATCAGGCGTTACGCGAGC GGGTACTGGACGGTCGATTGAGTGGTGGCGCGCGTTTGCCGGCCAGCCGTGACTTAGCGGCAGCGCTCGGTATTTCGCGCAATAGCGTCGTGCGCGCCTA CGATCAGCTGTACGCCGAAGGCTTTATAGAAGGCCGGATTGGAAATGGCACCTACGTCGTGCAATTACCCCAAAAAGCGCAGGCGCCAAAAAAGTTGTCC ACCAACTTGTCCACAGGGTTTTCAACAGGCTTACCCACAGGTTTATCCACAAAATCGTCTTTTTTACCTGTAATTACGTCCAGTAAAGTTATCCACAGCA CAGCGCTGCACAAGGTCTCAAGACACTCTCTGGACCTGCCTCCCAGTGGGCCGCCGCGCGCTTTTCGGGTGGGCATTCCGGCCTTTGATTTGTTCCCGTT TGAGGTCTGGAGCAAGCTGCAAGCCACTTTTTGGCGTAAGCCGGATTTGCAGCAACTGTGTTACGGCGATCCGGCCGGGGATGAGCGTCTGCGCGGGCTC ATTGCCGCATATTTACGAACATCGCGGGGTTTATCCTGCTCCGCTGAACAAATTTTGATCACCTGCGGCGCGCAGCAAGGAATTAGCCTTTGTGCACAGT TGCTGGTGGAGCTGGGTGAGGGCGTGGCGGTGGAAAACCCCGGCTACCACGCGGCAGCCCAAGCGTTCGCAATTGCGGGTGCTCAAGTGCTGGGGGTGCC GGTCGATCAGGAGGGCATGAAGTGTGACGCGTTAGCAGGCCTGCCGACTTGCCGATTGGCCTACGTGACACCGTCCCATCAGTACCCGTCGGGGGTGACC ATGAGCCTGGCGCGACGCCTTGAATTGCTGGCGTGGGCTGAGCGCACGCAAGGCTGGATTGTCGAAGATGATTACGATGGCGAGTACCGTTACAGCGGCG CGCCGTTGTCGCCATTGGCCGCGCTGGACCGCACCGGGCGCGTCATTTACGTCGGCACGTTTGGCAAGGTCGCCTTTCCGGCGTTACGCCTCGGTTATCT GGTATTACCCCACGCTCTGATTGAACCCTTCGCCCAACGTCGCTCGCTGGACATGCGCCATTCGGAGGTGAGCACCCAGGCGGTCATGGCCGAGTTTATG GCCGCAGGGCATTTTCAGCGTCACATCCGGCGCATGCGGCGCGCCGCATTGAGTCGGCGTAATGCCTTGCTGGCGCATTGGCCAAAGGGTGTTGAGGGTG TAGGAGAATTACCGGACATCGTGGCAGGTTTGCACGTCACCGTGCCGGTCAGCAGCCTTGAGCGCGAACATGTATTGCTGGCGCAGGCCCATCAGGTACA GGTAGAAATCAACGGTTTGAGTCGCTATTGGCTGCGCGACTCGGTCGAGCCTGTGGATAACCGTGCCGGTTTGGTGCTGGGGTTTGCGGGTGTGCCCGAG GCGGATATCCGCGCGGCGCTAGCGCGGTTGAGCAAGGTCTGGAGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTAACGCGCAGTCGCTGTCGCAGGCTGCGAAGGGTTGCTTAGCAACCCGTTTATCGAAAATACCGCTGACCTTTTTCCGCCTGGGCAGTGACTACGGAGG AGGGATTACGTACCCGATTTGATTTTGGTCCACGCCCGTGTGCGCGCCCGCTCGGCGTCACGCGGCAGCGGTGTGAGGGTGTAAAGCGTTTCCATCGCCG CTTCGGTGGGGTACAGGTTCGGGTTATTGCGAATTCTTGGGGCCACCCGCTCTGTGGCGTCTTTGTTGGGGTTGGGGTAGCCGACAAAGTCACTGATCGG CGCAATCACTTTGGGTTGCAGCAGGTAGTTGATGAAGGTGTAGGCGTCTTCGGTATTTTTCGCCCCTTTAGGGATCGCCAGCATATCGAACCAGATGGGC GCGCCTTCTTTGGGTAGGCGCATGTCGACCGTCACACCATTTTTAGCCTCTTTGGCCCGGTTAGCCGCCTGCGAAAAACTGCCCGAATAACCGACCGCCA
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| Amino Acid Sequence |
>GntR family transcriptional regulator
MPDSALPIAFNPAGIELDPKKGLSRQLYQALRERVLDGRLSGGARLPASRDLAAALGISRNSVVRAYDQLYAEGFIEGRIGNGTYVVQLPQKAQAPKKLS TNLSTGFSTGLPTGLSTKSSFLPVITSSKVIHSTALHKVSRHSLDLPPSGPPRAFRVGIPAFDLFPFEVWSKLQATFWRKPDLQQLCYGDPAGDERLRGL IAAYLRTSRGLSCSAEQILITCGAQQGISLCAQLLVELGEGVAVENPGYHAAAQAFAIAGAQVLGVPVDQEGMKCDALAGLPTCRLAYVTPSHQYPSGVT MSLARRLELLAWAERTQGWIVEDDYDGEYRYSGAPLSPLAALDRTGRVIYVGTFGKVAFPALRLGYLVLPHALIEPFAQRRSLDMRHSEVSTQAVMAEFM AAGHFQRHIRRMRRAALSRRNALLAHWPKGVEGVGELPDIVAGLHVTVPVSSLEREHVLLAQAHQVQVEINGLSRYWLRDSVEPVDNRAGLVLGFAGVPE ADIRAALARLSKVWR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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