Pseudomonas sp. DSM 28140, TU87_RS20645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 14_88942_34.6293, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGACGCGTCATCGCTAATCCATATGCCTTGGCTGTCTTCACGGCAGTCAATGGCTGTCAGAAATTGCCCGGCGCAAGGCCCGGCAACGCATTCGCCAGAC TCAATCAAAAATAAGGCCGCGTGTGTCGCGCATTTAATCAGGCTGGCACTCTCATCAAGGAACTGATCGGGCTGCCATTCCAACCTGACGTGGCGGTGTG GGCAGCGATTTTTATAGGCGTAGACCTGCCCTTCGCGACGGACGATAAGAAGGTCCAGCTCAGGCGTGTCGACGCTGCGGCTGCAACCCTCGTTCAGTTC GTGTGAGTGACATAACAACTTCATGGCAATCCTTAATAGCACCTGATGCGAGCGTTGAGGGCGCTGGTGAGAGCGAGTTAAATGGTTGACGTGCAAATGC AAACAATTATCAAATGGCCCGTTGTACTTCGATGTGTAGTTTCAACGGTGCGGGATTTTCACGTATCCCGCTGAGTTCTCTTTTCAAGGAACGCCTCTGT
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| DNA Sequence for Gene |
>TU87_RS20645
ATGCGCTTGAGTATCCGCCTGATTACGCTCTGTGCAGGCCTTTTGATCAGTCACCTCGGCTCAGCTGCCGAACTGCCACAACGCTGGGTCAGTGCCGGTG GCGCACTCTCGGAGTGGGTGAGCACATTGGGTGCGGAGTCTAAATTGGTGGGGGTCGATACCACTAGCCAACATCCTGAATCACTTAAATCGCTACCTAG CATCGGTTATCAACGTCAGCTCTCGGCGGAGGGTATTTTGAGCCTGAGGCCGGATGTATTGATTGGCACCGAAGAGATGGGGCCAGCTGAAGTGTTGAAG CAAATTCGCAGTGCTGGCGTGCCCGTTGAGATGTTCTCGGCACAGCCTGAGCTGAGTGCTTTGCAGTCTAACCTTGCGCATTTAGGGCTTTTGTTGGGTG ACGAGGCTCATGCGGCGCAGGTGTTTGCGGGCTATCAAAACCAGTTGGAGCAGCAACAAGCTCAGGTCAAGCACGTACAGGCCAAGCACAAGGCACCGGG TGTTTTGCTGTTGCTGGGGCATGCAGGCGGAAAACCCATGATTGCAGGGAAGGACACCGCAGCCGACTGGCTGTTGACGCAAGCCGGAGGTCATAACCTC GCGACACACACCGGTTACAAACCTTTTTCAGTTGAGGCTTTGGCGGGGCTCAATCCCGAGGTGCTGGTGTTTGCTGACCGCAGTTTGAGTGGGGATGTCG CCCGCGCAGCGCTCTTGAAAGAAAACCCGGTTTTGGCGTCGATTCGCGCGGCTAAAACCGGGCGCATTTATGAAGTTGATCCGACGCTGCTGGTGGGGGG GCTGGGGCCACGTTTGCCGGACCGTCTCAAACAGCTTACGGCTGAGTTTTACCCTGCGGCCTCGGTTGCTCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGACGTTGGTAAAGCCCCGTCCTTTGTTTATAGGGTTGTGCATGTTGTGCCTACTGGCGACCTGGCTGTCGTTGGCACTGGGGCCAGTGAGCCTGCCGCT CTTTGACACCTTGCGCGCAGCATTGCGCTTGCTCGGTATGCCCATCCAGGGCGAAGGCTTGGAGCAGGCTGAGTTGATCCTAGGCCAGATCCGTGTGCCG CGCACCTTATTGGGTTTGGCGGTGGGCGGTGTGCTGGCGCTCTCGGGCGTTGCCATGCAGGGCTTGTTTCGAAACCCTTTGGCCGATCCAGGTTTGGTGG GCGTGTCCAGTGGCGCCGCGCTGGGTGCGGCTATCGCCATTGTTGGCGGCTCAGCCTTTGGCGGTTTGCCAGACGTCCTCGGGCCTTATGTGTTGTCGTT AAGCGCGTTTCTCGGCGGGTTGGGCGTCACGGCGCTGGTTTACCGTTTGGGGCGGCGTAATGGCCAGACGAATGTCGCGGTTATGTTGCTTGCCGGTATC
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| Amino Acid Sequence |
>ABC transporter substrate-binding protein
MRLSIRLITLCAGLLISHLGSAAELPQRWVSAGGALSEWVSTLGAESKLVGVDTTSQHPESLKSLPSIGYQRQLSAEGILSLRPDVLIGTEEMGPAEVLK QIRSAGVPVEMFSAQPELSALQSNLAHLGLLLGDEAHAAQVFAGYQNQLEQQQAQVKHVQAKHKAPGVLLLLGHAGGKPMIAGKDTAADWLLTQAGGHNL ATHTGYKPFSVEALAGLNPEVLVFADRSLSGDVARAALLKENPVLASIRAAKTGRIYEVDPTLLVGGLGPRLPDRLKQLTAEFYPAASVAP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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