Pseudomonas sp. DSM 28140, TU87_RS20140

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. DSM 28140 12_125739_29.0005, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GACCCGGCGACGCGGGCGTGGATCAGCGCCAATGTCATGCCGCACCTGCAAAGCACCAGTGCGCCGCGCAAGGTGGAAGTGACCGCCACTCAGCCCGCGT GGGAATTGGCCCTTGAAGCGGTGCTACCGATTCTGCGCAAGGACGGCCTCAAGCCCGCCGTACAGACCCTCAAACAAGGCTTGCAAAACGCTCAGGGTGG ACGTGTCCGGTTTTTTTGGCAGTTCGCCCTCGCGCGGCTGTGTTTTATGGCCAAGAAGTACGAGCTGGCCAAGACCCAGCTTGAGACCCTGGACCACACA TTACAGGACTCAGGCCTGCATGCCTGGGAGCCCGATCTTGCGCTGCAAGTACTGCATTTACTGCACAGCTGCTGCGAACTGTTGCCGCAGAACCATGCCG TACGTGAACGCAGGGATGAGATTTATCGCAGGTTGTGCCATCTCGATCTCGAAGTGGTACTCGAATAGGCCCCAGGGTCATACACGCAAGGAAAAAAACC
DNA Sequence for Gene
>TU87_RS20140
ATGGCCAAAGAAGGCTCGGTAGCCCCCAAGGAACGCATCAACGTCACCTTCAAGCCCGCCACCGGTGGTGCTCAGGAAGAAATTGAACTGCCGTTGAAAC TACTCGCCATCGGTGATTACACCCACCGCAAGGACGAACGCAAAGTCGAAGATCGCAAGCCGATCAGCATCGACAAAATGACGTTCGACGAAGTGCTGGC CAAGCAAGAACTGAGCCTGACCTTGAGTGTTGCCAACCGCCTTCAGGAAGAGAGCGACACTGAAGAATTGGCCGTGAAATTGCGCGTTAACTCGATGAAA GACTTCAACCCGGCCAGCCTGGTTGAGCAAGTGCCGGAGTTGAAAAAACTGATGGAGCTGCGCGACGCGCTGGTGGCCCTCAAAGGCCCATTGGGCAATG CGCCGGCCTTTCGCAAAGCCATCGAAAGCGTATTGGCCGACGATGAATCCCGTGGTCGCGTACTGGGCGAGCTGGGCTTGAACGCCGCCGCCCAGGACGC TTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCCCCATCAGCCAAGGAAGACAACGCAATGAGCACCAACGCAGCGCAGCAAAGCAGTACCGAAAACGGCGAATACAGCATTCTTGACAACATCATCGCC CAGACGCGTCTGACCCCGGACGACGAAGCCTATGACATCGCCAAGCGTGGCGTGTCGGCGTTTATCGAAGAGCTGCTCAAGCCGCAGAACAATGGTGAAC CCGTCAAGAAGGCCATGGTTGACCGCATGATTGCTGAGATCGATGCCAAGCTCAGCCGTCAAATGGACGAAATTTTGCACCACCCTGATTTCCAGTCGCT GGAATCGTCGTGGCGTGGCCTGCAACTGCTGGTTGACCGCACCAATTTCCGCGAAAACATCAAAATCGAAATCCTCAACGTGTCTAAAGAAGACCTGCTG GACGATTTCGAAGATTCGCCAGAAGTGATGCAGGCCGGCCTGTACAAACACATCTACACCGCCGAATACGGCCAGTTTGGTGGTCAGCCTGTGGGCGCGA
Amino Acid Sequence
>type VI secretion protein
MAKEGSVAPKERINVTFKPATGGAQEEIELPLKLLAIGDYTHRKDERKVEDRKPISIDKMTFDEVLAKQELSLTLSVANRLQEESDTEELAVKLRVNSMK DFNPASLVEQVPELKKLMELRDALVALKGPLGNAPAFRKAIESVLADDESRGRVLGELGLNAAAQDA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site