Pseudomonas sp. DSM 28140, TU87_RS20135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 12_125739_29.0005, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGCATCAACGTCACCTTCAAGCCCGCCACCGGTGGTGCTCAGGAAGAAATTGAACTGCCGTTGAAACTACTCGCCATCGGTGATTACACCCACCGCAAG GACGAACGCAAAGTCGAAGATCGCAAGCCGATCAGCATCGACAAAATGACGTTCGACGAAGTGCTGGCCAAGCAAGAACTGAGCCTGACCTTGAGTGTTG CCAACCGCCTTCAGGAAGAGAGCGACACTGAAGAATTGGCCGTGAAATTGCGCGTTAACTCGATGAAAGACTTCAACCCGGCCAGCCTGGTTGAGCAAGT GCCGGAGTTGAAAAAACTGATGGAGCTGCGCGACGCGCTGGTGGCCCTCAAAGGCCCATTGGGCAATGCGCCGGCCTTTCGCAAAGCCATCGAAAGCGTA TTGGCCGACGATGAATCCCGTGGTCGCGTACTGGGCGAGCTGGGCTTGAACGCCGCCGCCCAGGACGCTTGAGTCCCCATCAGCCAAGGAAGACAACGCA
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| DNA Sequence for Gene |
>TU87_RS20135
ATGAGCACCAACGCAGCGCAGCAAAGCAGTACCGAAAACGGCGAATACAGCATTCTTGACAACATCATCGCCCAGACGCGTCTGACCCCGGACGACGAAG CCTATGACATCGCCAAGCGTGGCGTGTCGGCGTTTATCGAAGAGCTGCTCAAGCCGCAGAACAATGGTGAACCCGTCAAGAAGGCCATGGTTGACCGCAT GATTGCTGAGATCGATGCCAAGCTCAGCCGTCAAATGGACGAAATTTTGCACCACCCTGATTTCCAGTCGCTGGAATCGTCGTGGCGTGGCCTGCAACTG CTGGTTGACCGCACCAATTTCCGCGAAAACATCAAAATCGAAATCCTCAACGTGTCTAAAGAAGACCTGCTGGACGATTTCGAAGATTCGCCAGAAGTGA TGCAGGCCGGCCTGTACAAACACATCTACACCGCCGAATACGGCCAGTTTGGTGGTCAGCCTGTGGGCGCGATCATCGCCAACTACTTCATGTCCCCAAG CTCGCCCGACGTGAAGCTGATGCAGTACGTGTCCAGCGTGGCCTGCATGTCCCACGCGCCGTTCATTGCAGCGGCCGGTCCCAAGTTCTTCGGTCTGGAA AGCTTCACCGGCTTGCCTGACCTCAAGGACCTCAAGGACCACTTCGAAGGCCCGCAATTTGCCAAGTGGCAGAGCTTCCGCCAGTCCGAAGACTCGCGCT ACGTGGGTTTGACCGTGCCGCGCTTCTTGCTGCGCAACCCGTACGACCCCGAAGAAAATCCGGTCAAGTCGTTCGTCTACAAAGAAACTGTCGCCAACAG CCACGAGCACTACCTGTGGGGCAACACCGCCTACGCGTTTGGCACCAAGCTGACTGACAGCTTCGCCAAGTTCCGCTGGTGCCCGAACATCATTGGCCCG CAGAGCGGTGGTGCGGTTGAAGACCTGCCGCTGCACCACTTCGAAAGCATGGGCGAAATCGAAACCAAGATTCCGACCGAAGTACTGGTGTCTGACCGCC GTGAATACGAATTGGCCGAGGAAGGTTTCATCTCTCTGACCATGCGCAAAGGCAGCGACAACGCCGCGTTCTTCTCAGCCAGTTCCGTGCAAAAGCCCAA GTTCTTTGGCATCAGCGCTGAAGGCAAGGCCGCCGAGCTGAACTACAAACTGGGCACCCAGCTGCCGTACATGATGATCGTCAACCGTTTGGCTCACTAC TTGAAAGTGTTGCAGCGCGAGCAACTCGGTTCGTGGAAAGAGCGCACCGACCTTGAGCTGGAACTTAACAAGTGGATCCGCCAGTACGTGGCCGACCAGG AAAACCCGAGCGCCGAAGTGCGGGGTCGTCGTCCATTGCGTGCAGCCCAGATCATCGTCAGTGACGTTGAAGGCGAGCCTGGCTGGTACCGCGTCAGCTT GAACGTGCGTCCGCACTTCAAGTACATGGGCGCCGATTTCACTCTGTCGCTGGTTGGCAAGCTGGACAAAGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGAGCGTCTGATGACGGGATACGGCAGCCTTTTCGAACGCCTCAATGGCGATGCGGACAAACGCGTCGGCTGGAGCCGCGAGGTGTCGGCGATGGCGT CTGTGGCTGCCCACCTCGCCAAGATGCTCAGCACCCGTGCGGGCAGTGTGCAAACGCTGTCCGATTACGGGTTGCCCGATCTCAATGACATGCGCCTGAG CCTGCACGACTCCTTGAGTCAGGCACGTTTGGCGATTGTGGGTTTTATCGAAGCCTACGAACCGCGCTTGAGCGAGGTGCGTGTCGTTTCTTTGCCGCGG GATAACGATCAACTGCGCCTGACCTTCAGTATCGAAGGGCTGCTGGAAGTTGAGGGTTTGAAGCGTCAAGTGACGTTCTCCGCCTGCCTGGACGGCAGCG GTCAAGTCAAAGTGACCTGAAAATTGCGCGCCGCAACAGGGCGGCGCATCGCGAGACGTGAGCAGTTCCTTATCGGTCCGGGGGTGGGCAAAGCCTGGAC
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| Amino Acid Sequence |
>type VI secretion protein
MSTNAAQQSSTENGEYSILDNIIAQTRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVKKAMVDRMIAEIDAKLSRQMDEILHHPDFQSLESSWRGLQL LVDRTNFRENIKIEILNVSKEDLLDDFEDSPEVMQAGLYKHIYTAEYGQFGGQPVGAIIANYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLE SFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYVGLTVPRFLLRNPYDPEENPVKSFVYKETVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGP QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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