Pseudomonas sp. DSM 28140, TU87_RS20095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 12_125739_29.0005, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCTTAAACAGAGTGTGGGAGGGTTGCAGCAGAGCCTGCGCACCCGCAGCGAGCTGAAAAACGAGTTGCGTCTGGCGCAAACCACTGTTCAAAGCACGC AAAAGAACCCGCTGAAAGTGGCCATCGACGCCAGTGAAGCGCTGGGCATCCTGCTTGCGCCAGGCCGTGCGGGACAGTTGTCGGCCGAGCAGTCTGTTGC GCGAGCCTTTCGTGATGTGCAGGCGCATCAGGTGGCATTGCTGAGCGCCAGCCGGGCGGCGTTGCGTAGCACGCTGGAGCACTTTTCGCCCGAGCGCCTG ACCCTGCGATTTGAGCGTGACAACAAGCCTTTGTTGGCCACCTCCGGCAGCCGCTGGAGAGCGTTCGGTCGCTATCACCAGGCGTTGCAACAGGACGATG ACTGGAGCGAACGCCTGTTGGCCCGTGACTTCGCGCAAGCCTACGAAGAACAGGTGCGCTTGATTTCTTCCCTTCACAACGACTACCAAGGATGAAGCGC
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| DNA Sequence for Gene |
>TU87_RS20095
ATGTCTTGCTGCTCGCCCCGTTTGTTTCACACGCTGCTGGCCTGCGCCGCCCTGGTGCTGATGGCGGGCTGCTCGACCCTGTCACCGTATTCGACGCTGA CCAAGGTCAATCTCAAACTTCAAGCCAGTGATCAATTGAACCCTGATCTTAACGGGCGTCCTTCACCTGTGGTGGTGAGCCTGTTTGAACTCAAACACCC GGTGGCGTTTGAGAATGCGGACTTTTTCAGCCTGTATGAGCATGCCAAAGAGGCACTCAGCCCGGACATGGTCGCCAGCGAACAGCTTGAGTTGCGCCCA GGTGAAACCCTGGAGTTGAAACTCAGCGTAGAGGAGGGCAGCCGTTATATCGGTATCCTCGCGGCGTACCGCGACCTGCCTGACAGTAAGTGGCGCTATA CGGTTGAAGTCACCCCGCAAGAGACAACGGACGTGGCGTTGATCCTCGATCAGAGCGGCATTCTCAACGCTCAAAAAGTGCTCGCCAAGGCGGATGACTG A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCATGAATGCGCACAAAGTCATTTGGCAGGAAGGCATGCTGCTGCGTCCGCAGCATTTTCAACATAACGATCGTTATTACGACCATCAGATGAAAACCCG CACGCAGTTGCTGGGCAGTTACATTTGGGGGTTTTTGGGGCTGGAAATCGATTTGCAGTTCCTCAGCATGGGCAAGCTGGTGGTCAGCCAGGCGTCGGGG ATCTTGCCCGACGGCAGCCTGTTTGAGTTGGGCGGCAACACTGAACCGCTGGCCCTCGATGTGCCACCCAACACCGGCAATACGCCGATTTACCTGGCGT TGCCGCTGGTCACCGGCAACCACATTGAAGCCCGCCGCCCGGAGCAATCCGATGTGTTGGCGCGTTACACCGCCTACGAGTCCGAAGTCACTGACTCTAA TGCAGGCGATGACTCGTCCAGCCAGGTGAGTTGCGCGCGGCCGGACTTTCGTTTGCTGCTGGGTGAGCAGCAGAGCGATCAGGCGTACGTCAAGCTCAAG
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| Amino Acid Sequence |
>type VI secretion protein
MSCCSPRLFHTLLACAALVLMAGCSTLSPYSTLTKVNLKLQASDQLNPDLNGRPSPVVVSLFELKHPVAFENADFFSLYEHAKEALSPDMVASEQLELRP GETLELKLSVEEGSRYIGILAAYRDLPDSKWRYTVEVTPQETTDVALILDQSGILNAQKVLAKADD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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