Pseudomonas sp. CCOS 191, CCOS191_RS20615 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CCOS191 genome assembly Pseudomonas sp. strain CCOS191, chromosome : I. [Details] | |
| DNA Sequence Upstream of Gene |
TGTCGGCGCGCAGGATGAACATCACGTACTTGAACGAAACCACCCACAGCAGCGACCAGAGGATCAACGACAGGATGCCCAGCACCCCGTCATGGTTGAC CTGTACGCCATAACCGCCGGTAAAGACCTCTTTGAGGGTGTACAGCGGGCTGGTGCCGATATCGCCATAGACCACCCCAACGGCCGCCACGAGCAGGCCC AGCGGCCGTGCCGCCCCCTGCTTCCCCGCGTGCCCGCCTTCGGCATGACTGCTTGCCTGAACCATCGACCACTCCCGCAGACGGCCTGTTAGACCGGTTG AATGCCTACCCGCGCCGAGCCCTCCCGGATACCCCGGCGCAACGGCGCGAAGCATAGCGCAGCGTTCGTCGTATTTCTGCTGGTAAAGCGACCTTGTGCT CGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCGAAAGCGCCCGCCAGGATCGCCCCCGTTACCGGCCGGGCGACCTGTATTCAATACCGAGGTTAGCC
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| DNA Sequence for Gene |
>CCOS191_RS20615
|rimO
ATGTCCACCACTCCCGCCACCCCGAAGGTCGGCTTTGTCTCACTGGGTTGCCCCAAGGCCCTGGTCGATTCCGAGCGCATCCTGACCCAGCTGCGCATGG AAGGCTATGAAGTCGTGCCTACCTACGAGGATGCCGACGTGGTGGTGGTCAACACCTGCGGCTTCATCGACAGCGCCAAGGCCGAGTCGCTGGAAGTGAT CGGCGAAGCCATCAAGGAAAACGGCAAGGTCATCGTCACCGGCTGCATGGGTGTCGAGGAAGGCAGCATCCGTGACGTGCACCCCAGCGTGCTGTCGGTC ACCGGCCCGCAGCAGTACGAGCAAGTGGTCAATGCCGTGCACGAAGTGGTGCCACCGCGCCAGGACCACAACCCGCTGATCGACCTGGTGCCGCCCCAGG GCGTCAAGCTGACCCCGCGTCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGGCAAGCT GGTCAGCCGCCCGGTCGGCGAAGTCCTGAGCGAAGCCGAGCGCCTGGTCAAGGCCGGCGTCAAGGAGATCCTGGTGATCTCCCAGGACACCAGCGCCTAC GGCGTGGACGTCAAGTACAAGACCGACTTCTGGAACGGCCGCCCGGTCAAGACCCGCATGCTCGAGCTGTGCGAAGCGCTGAGCAGCCTGGGTGCCTGGG TGCGTCTGCACTATGTCTACCCGTACCCGAACGTCGACGACGTGATTCCGCTGATGGCCGCCGGCAAGATCCTGCCTTACCTGGACATCCCGTTCCAGCA CGCCAGCCCCAAGGTGCTCAAATCAATGAAGCGCCCGGCCTTCGAAGACCGCACCCTGGCGCGCATCAAGAACTGGCGTGAACAGTGCCCTGAGCTGGTG ATCCGCTCGACCTTCATCGTCGGTTTCCCCGGCGAAACCGAGGAAGACTTCCAGTACCTGCTCGACTGGCTGACCGAAGCCCAGCTCGACCGCGTTGGCT GCTTCCAGTACTCGCCGGTCGAAGGCGCCCCGGCCAACGACCTGGGCCTGGAAGAGGTGCCGGACGACGTCAAGCAGGATCGCTGGGACCGCTTCATGGC CCACCAGCAGGCCATCAGCACCGCCCGCCTGCAACTGCGTATCGGCAAGGAAATCGAAGTGCTGATCGACGAAGTCGAAGAGCAGGGCTCGGTGGGCCGC AGCTTCTTCGACGCGCCGGAGATCGACGGCAGCGTGTTCATCGACGGCGACCACGGCTTCAAGCCGGGCGACAAGGTCCGCTGCCGTATCGTCGACGCCG ACGAGTACGACATGTGGGCCGAGCCCATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGAAACTCGCCTGAAAATACCCCGCCAGCTGGCGGGGTATTTTTTTGCATCTATGTTTTCCTCAATGGCACCGAGGATCACAGGATGTCGCCCACCGTC ACGCTGCACACACCTCATCTGAGCGATTATCCCGAGCTGGTCCGGGTGTGGGAGGCGTCGGTGCGGGCCACCCACGACTTCCTGCCCGAGGGCTACATCG TGCTGCTGCGCGAACACGTGCTGCGCAAGTATCTGGATGCCGTGATGCTGGTCTGCTGCAAGGACAGCAAGCGGCACATCCTCGGCTTTGCCGGGGTGGC TAACGGCCGGGTGGACATGCTCTTCGTCGCGCCCGAACACCGTGGCCAGGGCATCGGGCGGCGCCTGCTGCGCCACGCGGTGCACGAATTGAACGCCGAG CGCCTGGACGTCAACGAACAGAACCCGCAAGCCCTGGGTTTCTACCTGCATGAAGGCTTCGAGATCTATGGCCGCTCGGAAACCGACGGCCTAGGGCAGC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGSIRDVHPSVLSV TGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAY GVDVKYKTDFWNGRPVKTRMLELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDRTLARIKNWREQCPELV IRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLEEVPDDVKQDRWDRFMAHQQAISTARLQLRIGKEIEVLIDEVEEQGSVGR SFFDAPEIDGSVFIDGDHGFKPGDKVRCRIVDADEYDMWAEPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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