Pseudomonas sp. CCOS 191, CCOS191_RS15385

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00056
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psec03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.310.20 - IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily 2 115 3.8E-34
Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein IPR003265 HhH-GPD domain 121 250 1.5E-7
SMART SM00478 endo3end IPR003265 HhH-GPD domain 125 281 9.6E-7
Pfam PF06029 AlkA N-terminal domain IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 3 115 2.4E-32
SUPERFAMILY SSF48150 DNA-glycosylase IPR011257 DNA glycosylase 107 280 2.62E-42
CDD cd00056 ENDO3c IPR003265 HhH-GPD domain 117 250 6.31303E-21
SUPERFAMILY SSF55945 TATA-box binding protein-like - - 2 99 1.35E-24
Gene3D G3DSA:1.10.340.30 Hypothetical protein; domain 2 - - 116 234 7.6E-30
Gene3D G3DSA:1.10.1670.10 - IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal 236 281 1.2E-12
PANTHER PTHR43003 DNA-3-METHYLADENINE GLYCOSYLASE - - 88 278 4.4E-30
SMART SM01009 AlkA_N_2 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 1 115 4.0E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.