Pseudomonas sp. CCOS 191, CCOS191_RS14740
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CCOS191 genome assembly Pseudomonas sp. strain CCOS191, chromosome : I. [Details] | |
| DNA Sequence Upstream of Gene |
TGTCCACCGGCCAGCGCAAGCGCCTGGCGCTGATCAATGCCTGGCTCGACCAGCGCCCGGTGCTGGTGTTCGACGAATGGGCCGCCGACCAGGACCCGGC CTTCCGCCGCGTGTTCTACACCGAGCTGCTGCCGGAACTGAAACAGCAGGGCAAGACCATCATCGTCATCTCCCACGACGACCGCTACTTCCCGGTGGCC GACCAACTGGTGCGCATGCACGGCGGCCAGATCGTCGTCGAGCGCAACCAGGAACCCGCCCTGCCCGCCTGACCCCGCCTCACGGGCGGTGGATCCTCGC CACCGCCCGCACTTTGTAAATTCCCCGCCGCATCGCTCGTTCCCCTATTGCCGCACGCTGAATCAACCCTGCCCACAGGGAAGTCGCAGGTCAGGCCTCT GCCAACCGAAAATATTTTTCCGGTTTTGGCATGCGCATGCGTCCTACTCGCAACGGAATAATTTTCATTTACTTTGCGTACCTTGAGCCAGAGCATAAAA
|
|
| DNA Sequence for Gene |
>CCOS191_RS14740
ATGCCAATACCAGCCAACACACTGACCCCTTTGAGCAAGGCGCTGATGCTGCGCCGGATGCTGCGTTCCTCGCCGGCCATGGCCACCCTCGGCCTCGCCC TGTCCCTGCCGCTCGCAGCGCAGGTGCAGGCCCAGGAGCAGGATTTCGACATCCCGGCACAATCGCTGAGCAGCGCGCTGCAAGAACTGGGTCGCCAGGG CAACCTGCAGGTGCTGTTCAGCCCCGAGACCGTACAGGGCCTGCGCAGCAGCCCGGTCAAGGGTCGTTTCTCGCCAACCCAGGCAGCTGGGGAGCTGCTG AAGAACAGCGGGATTCGCTACAGCGTGCAGGACAACACCCTGATCATCAGCGGCGCGGCTGAATCCGGTTCGGCCATGACCCTGGACGCCACCACCATCA ATGGCCAGGTGCTGGGTGCCACCACCGAGGGCAGCAACTCCTACACCACCGGCGCGGTGACCATCGGCAAGACCGCGCAATCGCTGCGTGAGACCCCACA GTCGGTCACCGTGGTCACTCGCAAGCTGATGGACGACAAGAACCTGGTTTCGCTGGATCAGGTGATGGCCCAGACCACCGGTATCACCCGCGCCAACCGC GGCTACGGCAACCACCACTTCAGCTCCCGTGGCTTTGACCTCACCGATGAAAGCTACATGGTCGACGGCGTGCCCGGTCAAGCCTACGCCTACACCGGCT GGATGACCCCGGACATGGCGATCTTCGACCGCGTCGAAGTGCTGCGCGGCGCCTCTGGCCTGCTGGTGGGCGCGGGCAACCCGGGCGGCGCAGTGAACCT GGTGCGCAAGCGCCCGACCGCCGACCCGCGTTTCTCCGTCATCACCCGCGCCGGCTCCTGGGACAACTACCGCCTGGACCTGGATGCCAGCGGCCGCCTC AACCCCCAGGGTACCCTGCGCGGACGCATGGTCGCCTCCTATGAAGACCGTGGCTACTTCACCGACGTCACCAAGTCCAAGCGGCCGCTGCTGTACGGCA TCGTCGAAGCCGACCTCAACGATGCCACCACCGTCGCTGTCGGCCTGCGCCGCCAGACCTCGCGCATCGACGGCTACAGTGTGCTGGGTATCCCCAACAA CCCCGACGGCAGCAACCCGCACCTGAAGCGCTCGACCTACCTCGGGCAGGACTGGACCAAGTTGCAGACCAACATGGACGAGGTGTTCGCCGACCTCACC CATCGATTCAACGACAACTGGACCGGCAAGCTGGCGCTGTCTCACTCCGAAGGCGGCTACAACCGTAGCGCCATCGAGTGGGGCGCGCGCGAGACGCTGG AGTACAACGCCCCAGGTGGTCCGACGGTCAACACCGTCAGCTACCACAAGTTCGATGTGACCTCCAATGCCGTCGACGGCCACCTGGACGGCACGTTCGA GGCCTTTGGCCTGACCCACCAGCTGACGCTCGGTGCCAACTGGTCCAAGCGCAAGATGAACGACAAGGACAACACCATAGCGCTGCCCAGCCCTATCCCG CTCAATGTCTTTGATCCCGACCATAGCAATATCCCGGAATTGCAGCGCAATGGCTGGAAGTCCATGGATGACACCATCGACACCCGCTACGGCACCTACC TGAGCGCCCGCCTGCACGCGACCGAAGACCTGAGCTTCGTCCTCGGTGGTCGCCTGAGCTGGTACAAGAACGAAGCCTGGAACGGCCCGAAGGTGACGAC CAGCCGGCAGGACGAGGAATTCACACCCTTCGTCGGTGCGATCTACGACCTGAACGACCAGTGGTCCTGGTACGCCAGCTACGCCGACATCTTCCTGCCG CAGTCCAACTACCGCACCGTCAGCGGCAGCGTGCTCGACCCGTCGGTCGGTTCGAACTACGAGACCGGGATCAAGGGTGAGCTGTTCGACAAACGCTTGA ACGTGTCCTTCGCCGTGTTCTACATCGAGCAGGAAGACGTGGCCCAGCAAGATGCGGCCAACCGTGGCAAGTGCCCGACCGATCCGGCCGGCCGCTGCTG GGTCAATGGCGACGGCATCAACCGCAGCAAGGGCTTCGAGGCCGAGGCCACTGGCGAACTGCTGCCGGGCCTGCAGGTGGCGGCTGGCTACACCTACAAC ACCACCAGCTCCTCCGAAGGTGGCCCGATCTCGGCGCAGACCCCGAAACACATGGTGCGCGTGAACACCAACTACACCTTCCCGGGCGAGTGGAACCGCC TGAGCGTCGGTGGTGGCGTTTCGGCGCAGAACTCCTACGTCGATGCCTACAACGAGGCGTACAACAGCGGCCGGGCGATCTTCGACGCGCGTGCCGCCTA CAAGCTCGACGAACACTGGACCGTGGGCGTGGACGTCGAGAACCTGTTCGACCGCAAGTACTTCGACTCGATGGGCTACTGGACCCGCGGCACCACCTAC GGTACTCCGCGTAGCTACATGTTCACCCTGCGCGGCGACTTCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACCCCGCACGGCAACAACCGGCGCCCCCTCTCGAGGGGGCGCTGTGTTTTCAGCGACATCCAACGCCCTGTTGTCTTTCCCCCCGCCCCACCGCACACTC GACCCCGCCAGCCAGGAAGCGGAGTCCGCAGTGCCCACGCCACGCCAATTCAGCAAGAAGACCAGCACCAGCAACATGCTGCGGCTCAAGTCCGGCGACG CCGGCAACCAGCGCCCCTATCGCGTCGACTTCGTCCTGCTCGAGCACTTCTCCATGGCCAGCTTCACCGTGGCGATGGACGTGCTGGTCACCGCCAACCT GCTGCGCGCCGATAGCTTCACCTCCACCCCGCTGTCACTGGGCGGTGATCGCGTGCTCAGCGACCTGGGCCTGGAACTGATCGCCAGCCCGCTCGATCCC CGTAGCCTGCAGGACCTCGACCTGTTGGTGGTGTGCGGCGGCCTGCGCACGCCATTGAAGTACCCCGACCTCGACCGCCTGCTGGGCGACTGCGCCAGCC
|
|
| Amino Acid Sequence |
>ligand-gated channel
MPIPANTLTPLSKALMLRRMLRSSPAMATLGLALSLPLAAQVQAQEQDFDIPAQSLSSALQELGRQGNLQVLFSPETVQGLRSSPVKGRFSPTQAAGELL KNSGIRYSVQDNTLIISGAAESGSAMTLDATTINGQVLGATTEGSNSYTTGAVTIGKTAQSLRETPQSVTVVTRKLMDDKNLVSLDQVMAQTTGITRANR GYGNHHFSSRGFDLTDESYMVDGVPGQAYAYTGWMTPDMAIFDRVEVLRGASGLLVGAGNPGGAVNLVRKRPTADPRFSVITRAGSWDNYRLDLDASGRL NPQGTLRGRMVASYEDRGYFTDVTKSKRPLLYGIVEADLNDATTVAVGLRRQTSRIDGYSVLGIPNNPDGSNPHLKRSTYLGQDWTKLQTNMDEVFADLT HRFNDNWTGKLALSHSEGGYNRSAIEWGARETLEYNAPGGPTVNTVSYHKFDVTSNAVDGHLDGTFEAFGLTHQLTLGANWSKRKMNDKDNTIALPSPIP LNVFDPDHSNIPELQRNGWKSMDDTIDTRYGTYLSARLHATEDLSFVLGGRLSWYKNEAWNGPKVTTSRQDEEFTPFVGAIYDLNDQWSWYASYADIFLP QSNYRTVSGSVLDPSVGSNYETGIKGELFDKRLNVSFAVFYIEQEDVAQQDAANRGKCPTDPAGRCWVNGDGINRSKGFEAEATGELLPGLQVAAGYTYN TTSSSEGGPISAQTPKHMVRVNTNYTFPGEWNRLSVGGGVSAQNSYVDAYNEAYNSGRAIFDARAAYKLDEHWTVGVDVENLFDRKYFDSMGYWTRGTTY GTPRSYMFTLRGDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|