Pseudomonas sp. CCOS 191, CCOS191_RS00015
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006281 | DNA repair |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00611
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003697 | single-stranded DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00611
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0005524 | ATP binding |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00611
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psec03440 | Homologous recombination | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:1.20.1050.90:FF:000003 | DNA replication and repair protein RecF | - | - | 121 | 299 | 1.3E-116 |
| Gene3D | G3DSA:3.40.50.300 | - | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | 6 | 334 | 1.8E-85 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | 1 | 342 | 5.73E-35 |
| Hamap | MF_00365 | DNA replication and repair protein RecF [recF]. | IPR001238 | DNA-binding, RecF | 1 | 367 | 95.030167 |
| Pfam | PF02463 | RecF/RecN/SMC N terminal domain | IPR003395 | RecF/RecN/SMC, N-terminal | 3 | 357 | 5.0E-35 |
| Gene3D | G3DSA:1.20.1050.90 | - | IPR042174 | DNA-binding RecF, domain 2 | 121 | 299 | 1.8E-85 |
| NCBIfam | TIGR00611 | JCVI: DNA replication and repair protein RecF | IPR001238 | DNA-binding, RecF | 1 | 359 | 1.3E-116 |
| PANTHER | PTHR32182 | DNA REPLICATION AND REPAIR PROTEIN RECF | - | - | 1 | 360 | 3.5E-46 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.