Pseudomonas sp. CB1, TD31_RS20530
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGGTCTACATCATCCTCGGCGTGCTGTACGAGAGTCTGGTGCATCCGCTGACCATCATTTCCACGCTGCCATCGGCCGGCCTGGGCGCGCTGGCGCTG CTTTGGGCCTGTGGACAGAGTTTTTCCATCATGGCGCTGATCGGCCTGGTGCTGCTCATCGGCATCGTGAAGAAAAACGGCATCCTCCTTATCGATTTCG CCTTGAATGCCCAGCGCGCCGAGGGCTTGTCACCCCGCGAGGCCATTCGTCGCGCCTGCCTCACCCGGTTGCGCCCAATCGTGATGACGACCCTGGCCGC GCTCCTGGGCGCTGTGCCCTTGATGCTTGGCCTGGGCGCTGGAGCCGAGCTGCGCCAACCGCTGGGTATCGCCGTGGTGGGGGGGCTGATGGTCAGCCAG GTGCTGACCTTGTTCACGACGCCGATCATATACTTGCAGCTCGAACAACTGTTTCATGGTCGTCGCGCTCCAGCGCCACGCCAGGCCCCGGAGGGCAACC
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| DNA Sequence for Gene |
>TD31_RS20530
ATGCGTATCCTGATCATCGAGGATGAAGACAAAACTGCGGATTACCTGCGCCGCGGCCTCAGCGAGCAAGGCTATGCCGTGGATGTGGCCAACGACGGCC TCAACGGACTGCATCTGGCGCTGGAACTGGACTACGCGGTGATCGTACTGGATGTGATGCTACCCAGCCTGGACGGTTTCGGCGTGTTGCGCGCCCTCCG CGCGCGAAAGCAGACTCCAGTGATCATGCTCACGGCTCGTGAGCGCGTGGAGGACCGCATTCATGGCCTTCGTGAAGGCGCTGACGATTATCTGAGCAAG CCGTTTTCTTTTCTCGAATTGGTGGCGCGACTGCAGGCCCTGACCCGACGCAGCGGCAGCCAGGAGCCGGTACAGGTGCAGATCGGGGATCTGTTCATCG ATCTGATCAGCCGCAAGGCTCTGCGGGCAGGCCAGCGCCTGGACCTCACCGCGAAGGAGTTTTCCTTGCTGACCGTATTGGCTAGACGCCAGGGCCAGAT CCTGTCCAAGACGGCTATCGCTGAAATGGTCTGGGACGTGAACTTCGATAGCGACGCCAATGTGGTGGAAGTGGCGATCAAGCGCCTGCGGGCCAAGCTG GACAACCCATTCGAGGAAAAGCTGCTGCATACCATACGGGGCATGGGCTACGTACTGGAGAGTCGACTTGCGCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGATCGCGCTGCGCCTGGCGGGGCTCTTTGCGCTGGTCGCCGTGAGCGTGTTCGTGATCATCGGCGGCGCGCTCTACCGTCAGGTCGACAAGAGCCTG GATGTACTGCCCAATGCTGAACTTGAAGCGCGCTACAGCGTACTGGAGTCGGCGATCAGCCGTTTCGGCGACCCCGAGCACTGGGGCCGACTGACAAACA AGCTCAACCTGCTATCGGAGGAAGACAAGCGCATCCACTTCTGGGTGGTCAGCGGGAATCCGACCTATGAGTATGGCGCACCCGGCCCTGACGTCCGCCG CCTGGCCCAGGGGCCGCTGGGCATTCATGAGTGGCAGCGCGAAGACGGTACAGCGCTCAAGGTATTGGTCAGCACCCTGCCTGGCCGTGAGCAGCGGCCT TCCTTGCGTTTTCTTATCGGCATCGACGTTGCCAACGTGCGTCAGACCCACCACGATCTGGCCATGGCCCTGATCGCTTGCGCGGCGCTTGGCGTGATAC
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| Amino Acid Sequence |
>transcriptional regulator
MRILIIEDEDKTADYLRRGLSEQGYAVDVANDGLNGLHLALELDYAVIVLDVMLPSLDGFGVLRALRARKQTPVIMLTARERVEDRIHGLREGADDYLSK PFSFLELVARLQALTRRSGSQEPVQVQIGDLFIDLISRKALRAGQRLDLTAKEFSLLTVLARRQGQILSKTAIAEMVWDVNFDSDANVVEVAIKRLRAKL DNPFEEKLLHTIRGMGYVLESRLAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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