Pseudomonas sp. CB1, TD31_RS15755

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CB1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCCCACGGGTGCACATCACCTACGACGTGGACATCGGCGACGCACAGGAAAAGAAGGAGCTGCCCTTCGTGGTCGGCGTGCTGGGGGACTTCTCCGGCCA CCCGCTGGAGCCGCTGCCCAAGCTCAAGGATCGCAAGTTCGTGTTCATCGACCGCGACAACTTCAACGGCGTGCTCAAGGGTATCAAGCCGCGCCTGGCC TACCGGGTGGACAACACCCTGGCCAAGGACGGCACCCAGTTGGGGGTGGAGCTGAACTTCAACAGCATGGAAGACTTCGAGCCGCAAAACGTGGTCAAGC AGGTCGAGCCCCTGCGCAAGCTGCTGGAGGTGCGCAACAAGCTGGCGGACCTACGCAACAAGATGGGCGGCAACGACAAGCTCGAGGAACTGCTGATGGA CGTATTGCAGAACACTGAGAAGCTGAAAACCCTGGGCAAGGAATTCGGCCGCGAAGCAGCCGTGCCTGCCGACACCAAGAACTGATCCGGGAGCCCGACG
DNA Sequence for Gene
>TD31_RS15755
ATGAACCACAAGCAAACGGCGCCGGAACTGGACAGCACCCTGGTCGAAGTGGAGAACTTCGCGCCCCAGGCTTCGCTGCTCGACAGCATCATTTCCGAAA GCCGCGTGGCCCGGTCCGAAACCGAGCGCACCCGCACCCGTGACCTGATCGGCGAGCTGGTCGGCCAGGTGCTCGAAGGCGAGATGACCCCCAGCAAAGA CCTGATCGCCGTGCTCGACGCGCGCATCGCCGAAATCGACGCGATGCTGTCCGAGCAGATGAACGAGATCATGCATGTCCGCGAATTCCAGCAGCTGGAA GCCTCTTGGCGCGGGCTCAAGTACCAGGTGGACCAGACCGAAACCAGCACGCACCTGAAGATCCAGCTGCTCAACGCCTCGAAGAAGGATCTGCTGCGCG ACCTGAAGGCTGCTTCGGAATTCGACCAAAGCGCGCTGTTCAAGAAGATCTATGAGGAAGAGTACGGCACCTTTGGCGGCGCCCCTTTCGGCATGCTGCT GGGCGACTACGAGTTCACCCGCAGCCCCGAGGACATGTACCTGCTCGAAGAAGTGTCCCATGTGGCCGCCGCCGCCCACGCGCCATTCATTTCCTCGGCC TCGCCCGAGTTGTTCGGCTGGGACTCCTTCACCGACATGTCCGGCCCCCGCGACCTGGCGAAAATCTTCGACACCGTGGAATATGCCAAGTGGAAATCCT TGCGCAGCTCTGAAGATTCCCGCTACGTAGGCCTGACCCTGCCCCACGTGCTCGGTCGCCTACCCTATGGCCCGGATACCGCGCCGGTGGAAGAATTCAA CTTCGTCGAAAGGGTCGACGGTCGCGACCACCACAAGTACCTGTGGATGAACGCCGCCTACGCGCTGGGCACCCGGGTGACCGATGCGTTTTCGCGCTAC GGCTGGTGCGTGGCCATTCGCGGCGTGGAAGGCGGAGGCCTGGTGGAAGGCCTGCCCACCCATACCTTTCGCACCGACGACGGTGAAGTCGCGCTCAAGT GCCCGACCGAGATCGCCATCACCGATCGCCGTGAGAAAGAGCTCTCCGACCTGGGGTTCATTCCGCTGGTGCACTGCAAGGGCACCGACTACGCCGCCTT CTTCGGCACCCAGTCGGTGCAGAAGCAGAAGCAGTACAACACCGACCTCGCCAATGCCAACGCACGGCTGTCTGCCCAATTGCAGTACATCTTCGCGACG TCGCGCATCGCCCACTATATGAAGGCGATCATGCGGGACAAGATCGGCAGCTTCGCTTCGCGCAAGGACGTGGAGCTATTCCTGAACAAGTGGCTGGCCA ACTACGTGTTGCTGGACGATACCGCCAGCCAGGAAGCCAAGGCCAAGTTCCCGCTGCGCGAGGCCCGTGCCGAAGTGGTCGAGGTGCCCGGCAAGCCAGG CGTATACAAGGCCGTGACCTTCCTGCGACCTCACTACCAACTGGACGAACTGACCGCGTCGCTGCGCCTGGTGGCTGAATTGCCTCAGGCCACCCGCGGA TAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTTTGCGATAGGTTGCGGTAGCCCGTGGTAATGCCAAGGAGGCATGCATTGAGCAGTTCCTACAAGCTGGTGCCATCGCTGCTCGACCGCCTGCTGGACG ATCGTCCGCAGGTGTCGGTCGAACCGGCGTCACAACGCTTGAGCTCGCTGGCCGATTACAAGGCCAGCATCGTGCGTGACCTCGAAACCTTGGTGAACAC TCGCCAGTGCCTGGCGGCCGATGAGCTGCGAAGTGACCGCTTCAAGGGTTTGCGCGGCACCATCCTCACCTACGGCATGCCGGATTTCACCAGCAAGGGC ATGCTCAACCCTGAGGATCGCTCGCTGATCCAACGCCAGCTCGAAACTGCCATCGCCACGGGCGACCGCCGTTTCAGGTCGGTAAGCGTACAGCTACTGG CCCAGCACACCGGGCAACGGATGTTGACGTTTCGCGTCGAGGCCGTTCTGCGCCTGCATGACGTGAGTCAGCAGGTGTCCTTCGACGCGGTGTTGCAGGT
Amino Acid Sequence
>type VI secretion protein EvpB
MNHKQTAPELDSTLVEVENFAPQASLLDSIISESRVARSETERTRTRDLIGELVGQVLEGEMTPSKDLIAVLDARIAEIDAMLSEQMNEIMHVREFQQLE ASWRGLKYQVDQTETSTHLKIQLLNASKKDLLRDLKAASEFDQSALFKKIYEEEYGTFGGAPFGMLLGDYEFTRSPEDMYLLEEVSHVAAAAHAPFISSA SPELFGWDSFTDMSGPRDLAKIFDTVEYAKWKSLRSSEDSRYVGLTLPHVLGRLPYGPDTAPVEEFNFVERVDGRDHHKYLWMNAAYALGTRVTDAFSRY GWCVAIRGVEGGGLVEGLPTHTFRTDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKGTDYAAFFGTQSVQKQKQYNTDLANANARLSAQLQYIFAT SRIAHYMKAIMRDKIGSFASRKDVELFLNKWLANYVLLDDTASQEAKAKFPLREARAEVVEVPGKPGVYKAVTFLRPHYQLDELTASLRLVAELPQATRG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site