Pseudomonas sp. CB1, TD31_RS15520 (fliA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04539	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04539	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04539	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	95	163	2.44E-13
Hamap	MF_00962	RNA polymerase sigma factor FliA [fliA].	IPR028617	RNA polymerase sigma factor FliA	7	244	66.913101
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	190	238	1.5E-18
FunFam	G3DSA:1.10.1740.10:FF:000002	RNA polymerase sigma factor FliA	-	-	6	90	3.8E-41
Gene3D	G3DSA:1.20.140.160	-	-	-	92	243	2.0E-44
SUPERFAMILY	SSF88946	Sigma2 domain of RNA polymerase sigma factors	IPR013325	RNA polymerase sigma factor, region 2	9	93	6.54E-25
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	48	61	4.2E-11
PANTHER	PTHR30385	SIGMA FACTOR F FLAGELLAR	-	-	14	245	1.3E-50
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	226	237	4.2E-11
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	102	168	5.3E-12
NCBIfam	TIGR02937	JCVI: sigma-70 family RNA polymerase sigma factor	IPR014284	RNA polymerase sigma-70 like domain	18	241	1.1E-34
PIRSF	PIRSF000770	SigK_SigE	IPR000943	RNA polymerase sigma-70	3	247	1.7E-35
FunFam	G3DSA:1.20.140.160:FF:000001	RNA polymerase sigma factor FliA	-	-	92	243	1.5E-74
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	194	206	4.2E-11
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	21	93	2.1E-18
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	211	226	4.2E-11
CDD	cd06171	Sigma70_r4	-	-	184	238	2.0001E-12
Gene3D	G3DSA:1.10.1740.10	-	-	-	5	90	3.8E-25
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	169	244	3.74E-20
NCBIfam	TIGR02479	JCVI: FliA/WhiG family RNA polymerase sigma factor	IPR012845	RNA polymerase sigma factor, FliA/WhiG	21	241	1.2E-83

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.