Pseudomonas sp. CB1, TD31_RS14035
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGAATTGATTTCGACCACCTTCAGGCTGGCGAACTCGCCTACCTGAACCTTGGGCTTCTCGGTGGTCGCCAGGAGCTTGTCTTCACTGTCCAGGTAAAC GAATACGTTCAGCCAGTCCTCGACCTCGTGAGGCACGCCCTTGGGTATGTAGCGGTTGGGCAAGAGGATCTCGCCATCAGCCCCGCCATCGAGGTAAAGC CCGAAATCCGTATGCTTGACGACTTGCAAGCTGTTGTAGCGACCCACCAAAGCCATGTTCGATACCTTCGTTGACAAGCCGATAGTGTAACCCAGCACAG TGCCGTCGATGGCTGATCCCCGCGCCTCACTCACCCCCGGCCAGGCTGAACGCTTCAGCTCATTTCGGCCAAATCGACGAGCGGCATGCGCCAAGCCGTG TTGAGCGTTATCCTCTGCCCCGTCTAAACCGGGCCTGGCGGCCTCGACCGGTGCCGTTGCGAACCAGACGTAGCACCCGCGCCTCGCACAGGAGTGACCC
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| DNA Sequence for Gene |
>TD31_RS14035
ATGCTCAAACCCAGCCTGATGCTGGCTGCCGGCCTATTGGCCGCGCCTCACCTGAACGCTCAGACCCTGCAGCGGGAATGGGGAGACTTCGACCTCAAGC TCGGCACCACGCCCAACCGCAGCATGGCCCAGGGGCTGGTCGCGCCTGGCTCGGTCGGCTCGGTACATGGCGGCATCGATATCAGTCACGACAGCGGCTG GTATTTCGGGCAATGGTCGCCCAGCGTTGGCCTGAGCCCGGACAGCAGCTTCGAACTGGACAGCTACCTGGGGTACAAGCAGCGGATCGACAATGCCCTC GGCTACGAGCTTGGCATGATCGGTTACACCCGCCCTGAAGTGGCGGACGGCAACAGCCATCAGCTGTATGCCGGCCTGCGTTTGTTCGAAAGCCGCTTTG GCGCGGCCTACAGCGAAGCGATAGGAAGCCGCTCGGGTACATTGTTCGCCGACCTCGGCCAATTGCCCCTGGTAGGCATGGATCTGTCCGTCAAGGTCAG CCACTACAGCTTGAGCTCGCCCTATGAATTGGGGGACGGCCAGTTGATCGACGGCTACAGCGACTGGTCGATGCAGGTGTCGCGCCCGCTCATGGGGGTC GACCTGAACCTGGTCTACAGCAGCTCGGACCTGAGCGGCGGGCAATGCCTGGCCTACTCCGGCCATAACCCGGCCTGTGACAGCATGGTGATGATCAAGG CGCAGCGTACCCTCTTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCTCAGGTATGAACAGCAGCCGGGACGAGGTGTCCTAGCTGGACTGGGCAACCGATGCGAAGGGTCAGGCATTGAGACGATGGCACGCCTTGCTGTGGC TATTGGGCCTGCTGGCCCTGGCGGGCTGCACCCGCATGGACCTGGCCTACCGCAACCTGGACACCCTCATTCCCTGGACCCTCGACGATTACCTGGACAT GAACCGGGAGCAAAAACACTGGTTCGAGGATCGCCTGGCCGAACACCTGCGCTGGCATTGCCAGACCCAATTGCCTGGCTACCTGCCCTGGCTGGACCGC TTCGAACAAGGCGTGGCTGAGCGAAGCCTCGATGACCGGGCCCTGCGTACACTGACCGACGAGGCCGAGCAGGCAGCCGCCGCGGTGGCAGTGCAAATCA CGCCCTCGGCGGTAGAGCTTTTGCAGCAACTGAACGATCAGCAGGTCAGCGACTTGAAGGTTGCGTTTGCCAAGGACATTGCCAAGCGACACGCGGAAAA
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| Amino Acid Sequence |
>lipoprotein
MLKPSLMLAAGLLAAPHLNAQTLQREWGDFDLKLGTTPNRSMAQGLVAPGSVGSVHGGIDISHDSGWYFGQWSPSVGLSPDSSFELDSYLGYKQRIDNAL GYELGMIGYTRPEVADGNSHQLYAGLRLFESRFGAAYSEAIGSRSGTLFADLGQLPLVGMDLSVKVSHYSLSSPYELGDGQLIDGYSDWSMQVSRPLMGV DLNLVYSSSDLSGGQCLAYSGHNPACDSMVMIKAQRTLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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