Pseudomonas sp. CB1, TD31_RS12220
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCGAGCCGAAAACCGGCTTCATGCTCATCGATACCCTGTTCAGCGAAGACGAAGGCGCCTGGATGGATGCCCTGCGCCACCTGATCCTGCCGGCCATC GTGCTGGGTACCATCCCGCTGGCGGTGATCGCCCGCATGACCCGCTCCTCGATGCTCGAAGTGTTACGCGAGGACTACATCCGCACCGCTCGCGCCAAAG GGCTCTCCCCTGCTCGCGTGGTGTTCGTGCATGGCCTGCGCAACGCCTTGATCCCGGTGCTGACCGTGTTCGGGCTGCAGGTAGGTACCCTGCTGGCCGG TGCCGTGCTCACGGAAACCATCTTCTCCTGGCCGGGCATCGGCAAATGGCTGATCGAGGCCATCGGCGCCCGTGACTATCCCGTGGTTCAGAACGGCATC CTGCTGATCGCCTGCCTGATCATCCTGGTCAACTTCGTCGTAGACATTCTCTACGGCCTGGCCAACCCACGCATCCGTCACCAGCGCTGAGATCCTGCCG
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| DNA Sequence for Gene |
>TD31_RS12220
ATGAATACCCAAGCTCAACCCGCGGCAGTCGATCAGAGCCTGCTGTACCCTTCGCCCCTGAAGGAATTCTGGAAAGCCTTCGCCCGCAACAAGGGCGCCG TGGCCGGCCTGCTGTTCATGGCCGTCGTAGTGTTCTGCGCGCTGTTCGCCCCCTGGGTCGCGCCTTTCGATCCCAGCGAGCAATTCCGCGATGCCCTGCT GACCCCACCCTCCTGGGCCGAGGGCGGCCAGCTCAAGTACCTGCTTGGCACCGACGAACTGGGCCGCGACCTGCTGTCGCGCCTGATCCACGGCGCGCGC CTGTCGTTGCTGATCGGCCTGTCCTCGGTGCTGATGTCGCTGATCCCGGGCATCCTCATGGGCCTGCTGGCGGGCTTCTTCCCGCGCATCCTCGGGCCGA CCATCATGCGCCTGATGGACATCATGCTGGCCTTGCCCTCGCTGTTGCTGGCAGTAGCCATCGTAGCCATCCTCGGCGCCGGGCTGATCAATACCGTGAT CGCCATTGCGGTAGTGTCCCTGCCTTCCTATGTTCGCCTGACCCGCGCCGCGGTGATGGGCGAGCTGAACCGCGACTATGTGACTGCCGCGAAACTGGCC GGCGCCAGCCTGCCGCGCCTGATGTTCGTGACCGTGCTGCCCAATTGCCTGGCGCCGCTGATCGTGCAGGCCACCTTGAGCTTTTCCTCGGCCATTCTCG ACGCCGCGGCCCTGGGCTTCCTGGGCCTGGGGGTACAGCCGCCGACCCCGGAGTGGGGCACCATGCTGGCCTCCGCGCGCGACTACATCGAGCGCGCCTG GTGGGTGGTGAGCCTGCCTGGCTTGACGATCCTGCTCAGCGTGCTGGCAATCAACCTGATGGGCGACGGCCTGCGCGACGCGCTGGACCCGAAACTCAAG AATGCGATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGGCCCCCATGTCATTGCTTGAAATCAAGAACCTGAGCGTGCGCTTCGGCGACGCCAGCGCGGTACCGGTAGTGGACGGCCTCGATCTTTCGGTGAAT CGCGGGGAAGTGCTCGCCATCGTCGGGGAGTCCGGCTCCGGCAAATCCGTCACCATGATGGCCCTGATGGGCCTGGTGGAGGCGCCTGGCATCATCAGCG CCGACACCCTGCGCTTCGATGGTCAGGACATGCTCAAGCTGAGCCGGCGCCAGCGTCGGCATGTGGTCGGCAAAGACCTGGCGATGATCTTCCAGGACCC GATGACCGCGCTCAACCCGAGCTATACCGTAGGCTTCCAGATCGAGGAAGTGTTGCGCGCGCATCTGGGCCTGTCGGGCCGCGCCGCGCGGGCGCGTGCC CTGGAGCTGCTGCAGAAGGTGGAAATCCCTGCCGCCGCCAGCCGCCTGGATGCCTACCCGCACCAGCTGTCCGGCGGCATGAGCCAGCGCGTGGCCATTG
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| Amino Acid Sequence |
>peptide transporter
MNTQAQPAAVDQSLLYPSPLKEFWKAFARNKGAVAGLLFMAVVVFCALFAPWVAPFDPSEQFRDALLTPPSWAEGGQLKYLLGTDELGRDLLSRLIHGAR LSLLIGLSSVLMSLIPGILMGLLAGFFPRILGPTIMRLMDIMLALPSLLLAVAIVAILGAGLINTVIAIAVVSLPSYVRLTRAAVMGELNRDYVTAAKLA GASLPRLMFVTVLPNCLAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPKLK NAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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