Pseudomonas sp. CB1, TD31_RS12005
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTATCTCCAGTGTTGTTATTGTTTTTCAGGTACAGCGGCAAAACGAGCCCAGCAACAGTGTCGGAAAGCGAGTGGGCATGCCCCCTGTCTCCGGAACG GCAAAACCTTCCGTGCCCAGGACAGCAGGGAAGCCTTCGAGCAAGATCATAGGTGATCTGTTGTCGTATGTCTTTATTTTCAGAAACTGCACAGATCAGG GTCTGTTTGAGTAGTCTTGAGACGAAGGTCAGGCTAGGTTGCCAACCAGACCGCCGGCCTGCTCGGGCTGTTGATCCCCAACGCTATGCACCATGCCCTG CTGTACCTCCTGGCGACCCTGGCAGGCAGCATGCTCACCGCCCTGGTGTACGCGGTGCACAAGAAAGCCGAAGGGGGGCGAATTGGTGGTGTCGCCTTCC TGATGCCGCGCGGGCCGGCTTGGAAAAACGAGCCGGCCTACACGAAGCTGTCATCTTGATTCCGTCTAGTAGCTCCTTCCTGTCCGACTAGGAGCCACAC
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| DNA Sequence for Gene |
>TD31_RS12005
ATGCCCAACTTCCCCATCGCTCGCCGTCGCCTCCTGCAAGGCGTCGGCGCGGGCCTGCTGTTGCCCGGCCTGGCCCCTGCCGTGATTGCATCAGTGAACG ACCGCCCCAAGGTCACCGACGGCGTGCAATCGGGCGACCCCCTGGGCGACCGCGCCATGATCTGGAGCCGCTGCGACCGGCCAGCGAAGCTGGTGGTGGA ATGGGATACCCGAAGCACCTTCAACCAGCCGCGGCGGGTTACCTCGACGCTGGTCACCGCGCAGAGCGACTTTACCGGGCGCGTTGAGCTGACCGGGCTG CCAGCAGGCCAGGCAATTTTTTACCGGCTGTGGTTCGAGGACGGCAATACCGGCGTGGCCAGCGAGCCCTGGTTCGGACACCTGCGCAGCGTGCCGGCCC AGGCCCGGGATATCCGCTTCGTGTGGAGCGGCGATACCGTGGGGCAGGGGTTCGGCATCAACCCGGATATCGGCGGTATGCGGATTTACGAAGCGATGCG CCTGCGCCTGCCGGACTTCTTTATCCACAGCGGTGACACCATCTATGCCGACGGTGTGGTCCCAGCGCAACTTACCACCGAGAATGGGCGTATCTGGCGC AACCTCACCACTGAAGCCAAAAGCAAGGTGGCCGAAACCCTGACCGATTACCGGGGCAACTACCGCTACAACCTGATGGACGATAACGTCCGGCGCTTCA ATGCCGAGGTGCCGCAGATCTGGCAGTGGGACGACCATGAAGTGACCAACAACTGGTCACCCAGCAAGCAGCTCGATGAGCGTTACCACACCCGAGACAT CCAGCAACTGGTAGGCCCAGCGCGCCAGGCCTGGCTCGAATATGCCCCCATGCGCCCCCAAAGCGGAGACAGCGGCCGCCGGGTATACCGGCGAATCCCC TACGGGCCGACCCTGGACATCTTCGTACTGGACATGCGCAGCTACCGAGGTGGCAACGATGCCAACCTGAGCCAGGCCATGGACGCACAAAGCGCCTTCC TGGGACGCGAGCAGTTGGACTGGCTCAAGGCCGAACTGGTGGCCTCCAAGGCCCAATGGAAGGTGATCGCAGCCGACATGCCCATCGGCCTGGGCGTACC GGACGGTGAAGTCAGCCCCGGGGTAGGGCGCTGGGAAGCCATCGCCAACGGCGACAACGGCCCGGCCAAGGGTAGGGAACTGGAGATTGCCGAGCTGCTC GGCCACCTGCGGCGCCAGCAGGTGAAGAACACCATCTGGCTGACCGCCGATGTGCATTACGCCGCAGCCCACCACTACCACCCGGACCGCGCCACCTTCC AGGATTTCGACCCCTTCTGGGAATTCGTCGCCGGCCCGCTGAACGCAGGAAGCTTCGGCCCCAACCCCCTGGACCTGACCTTCGGCCCCGAAGTGGTCTT TCAAAAAGCACCCCCGGCCCAGAACACTTCGCCTTTTGCCGGTTATCAGTTCTTCGGCGAAGTGAACATCGAAGCCGCCAGCGGCGAGCTCACCGTTACC CTGCGTGATTTGGATGGGGTGGCGATATTTGAGCGTAAGTTGCAGCCTGAGGTGGGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAAGGGGGGGGCGTGTCAGTCTGCCGGCGAACGGTTGCTTATAGCTGGCCAGTAGGGGGGCCGATCTGGCCTCTGCCGCTCTACACATTGATGCATCAA CAAACACATGCAATCATCGATTATGATGCGTAAAAACATCATTGTTGATGAGGAAACATGATGAGAACTACGGTGACGATTGACGACGAACTCTATAAGC GCGCCCTTGAACTGGCTGATCCCAGCATGGACAAGGCTGACCTATTTCGGGAGGCCGTAAAGACCTTTGTTCGCATTCAAGCAGCTAAACGCCTTGCCTC ATTAGGTTCCGCAGCGCCGTCTATGGAAGAGGTCCCCCGCCGACAAGGCGATCTCAGCTGATGGATGTGCTGGTCGATAGCTCAGTATGGATAGCGCACT TTCGTAGCCGTAATGAGGCACTGGTGGATCTGCTCGGCCACGATCGGGTGTTGATACACCCAATGATTCTAGGTGAACTGGCCTGTGGGACACCACCTGA
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| Amino Acid Sequence |
>alkaline phosphatase
MPNFPIARRRLLQGVGAGLLLPGLAPAVIASVNDRPKVTDGVQSGDPLGDRAMIWSRCDRPAKLVVEWDTRSTFNQPRRVTSTLVTAQSDFTGRVELTGL PAGQAIFYRLWFEDGNTGVASEPWFGHLRSVPAQARDIRFVWSGDTVGQGFGINPDIGGMRIYEAMRLRLPDFFIHSGDTIYADGVVPAQLTTENGRIWR NLTTEAKSKVAETLTDYRGNYRYNLMDDNVRRFNAEVPQIWQWDDHEVTNNWSPSKQLDERYHTRDIQQLVGPARQAWLEYAPMRPQSGDSGRRVYRRIP YGPTLDIFVLDMRSYRGGNDANLSQAMDAQSAFLGREQLDWLKAELVASKAQWKVIAADMPIGLGVPDGEVSPGVGRWEAIANGDNGPAKGRELEIAELL GHLRRQQVKNTIWLTADVHYAAAHHYHPDRATFQDFDPFWEFVAGPLNAGSFGPNPLDLTFGPEVVFQKAPPAQNTSPFAGYQFFGEVNIEAASGELTVT LRDLDGVAIFERKLQPEVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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