Pseudomonas sp. CB1, TD31_RS10945

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CB1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGCATGATCTGTCCAAGCTGAGTACCGGACTGGTGGAAGCGGCGCCGGCGGCTCATCAGTTGGCGCCGCACGCCCCGGTGGTCAAGGCACTGGATGGCCA GCGGGTGCGCCTGCCCGGCTATATCGTACCGCTGGAGGTAAACGACGACGGCCGCACCACGGATTTTCTCCTGGTGCCCTATTACGGCGCCTGCATCCAT GTGCCACCGCCTCCCTCGAACCAGATCGTCCATGTGCATACAGAGCTGGGCGTGAAGGTAGAGGAGCTGTATCAGCCCTATTGGGTCGAAGGCCCTATGC AGGTCAAGGCCAGTGTCAGCGATCTGGCCGAAGCGGGTTATCAGCTGGAGGCGGAGAAAATCTTCGCTTACGAACTGCCGGACTGAGCCTGGCGTGCGAC AGGTTGTCGCAGGCCTAGCCGGTCATTTATTGCTCCAGGTCAATAATCGCACCAGGTGAGACGTTCAGGATTGCGCCATTCGTACGTCAATGGAGCTTTC
DNA Sequence for Gene
>TD31_RS10945
ATGAAAACGTCTGTATTCGGTGCCGCCGTCCTTGCCCTGGCGCTCGCCTCCCCCTCGGCCTTCGCTCACCAGGCCGGGGACTTCATCATCCGTGCCGGCG CGGCCAAGGTTGCCCCCAACGAAGACAGCGGTGAACTCAAGCTTGACGGTACCCGCGTCAGCGGCACCAAGGCGACTCTGGACGGCGACACACAACTGGG CCTGGCCCTGGCGTACATGATCACCGACCACGTGGGCATTGAACTGCTGGCCGCCACGCCCTTCCAGCATCGGGTCGGCGTAAAGGGTATCAGCGCGGCC ACGGGTATCGACGGCCTGGACGGCAAGCTGGGCGACATTCGCCAATTGCCGCCCACACTGTCGCTTCAGTACTACCCCATGGCGCCCAGCTCACGCCTGC AGCCCTATGCGGGCCTGGGTGTCAACTACACCCTTTTCTATAACGAAGACCTGAGCAGCCAGCGCAAGGCCCAGGGCTTCAGCAACTTCAAGCTGCAAGA CTCCATCGGGCTGGCCGGGCAACTGGGGGTGGACTACATGCTCACCGATCACTTGATGTTCAATGCCGCCGTCTGGTACGCGGACATCAACACCAAGGCC AGCGTGGACGGCCCTACCGCGCTGGGCGTGGGCCGTACCAAGGTGGACGTGGAGGTAGACCCTTGGGTGTACATGGTCGGTCTGGGCTACAGGTTCTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TACCGCCTACCGAAGCCGGGCGCGATCACCCTCCCGCAGTCGCGCCGGCCACCTTGGCCCGTGCGGCCGAAGGCATCAGGAAAACAGCAGGCGCCGCAGC CCCGTTTCCAGGGGCGTGGTTTCTCCCAGCTGGAAATGCGCCAGCAAACGCTGGTTGTCGGCCCGGGAGTGCTTGATGTCTCCGGCACGGGCGGGTTGGT GGGTCACGGCGGGCAAACCGCCGAGCACGGCGCCCAGCGCCTGCAACAGGCGATTGAGCGAGGCCGCCTGGTTCAGCCCTACGTTGAAAGGCCCCACCGG CATGGCAGCAGCCTCAAGGGCTTGTACCAGCAGGCCGACAAGGTCTCCCACATAGAAAAAGTCCCGGGTTTGCTCGCCGTCGCCGAATACCGTGATAGGC AGGCCGGCCTGGGCACGCTGCGCGAAGATGCTGATGACCCCCGAATACGGCGAGGAAGGGTCCTGCCGCGGGCCATAGATGTTGAAGAAGCGGAACACCA
Amino Acid Sequence
>membrane protein
MKTSVFGAAVLALALASPSAFAHQAGDFIIRAGAAKVAPNEDSGELKLDGTRVSGTKATLDGDTQLGLALAYMITDHVGIELLAATPFQHRVGVKGISAA TGIDGLDGKLGDIRQLPPTLSLQYYPMAPSSRLQPYAGLGVNYTLFYNEDLSSQRKAQGFSNFKLQDSIGLAGQLGVDYMLTDHLMFNAAVWYADINTKA SVDGPTALGVGRTKVDVEVDPWVYMVGLGYRF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site